Forterre Patrick, Gribaldo Simonetta, Brochier Céline
Biologie Moléculaire du gène chez les extrêmophiles (BMGE), Département de Microbiologie fondamentale et médicale, Institut Pasteur, Paris, France.
Med Sci (Paris). 2005 Oct;21(10):860-5. doi: 10.1051/medsci/20052110860.
One of the most important outcomes of modern biology has been the demonstration of the unity of life. All living beings are in fact descendants of a unique ancestor commonly referred to as Luca (the Last universal common ancestor). The discovery - nearly 30 years ago by Carl Woese - that present-day life on our planet can be assigned to only three domains: two of prokaryotic nature (Archaea and Bacteria), and one eukaryoyic (Eucarya), has given birth to a new field of investigation aimed at determining the nature of Luca. Today, thanks to the accumulation of genomic data, we can loop back into the past and infer a few characters of Luca by comparing what present-day organisms have in common. For example, it is now clear that Luca was a cellular organism provided with a cytoplasmic membrane, and that it harboured already a quite sophisticated translation apparatus. However, the inference of other characters of Luca from comparative genomics is less straightforward: for instance, a few key molecular mechanisms for DNA replication are non-homologous across the three domains and their distribution is often puzzling. This evidence has been embraced by proponents of the hypothesis that Luca harboured an RNA genome and that its replacement by DNA and the appearance of the corresponding molecular systems would have occurred independently in the three life domains after their divergence. However, an equally likely scenario would be that of a Luca with a DNA genome and of a subsequent replacement of its DNA-replication systems by non-homologous counterparts either in the bacterial or in the archaeal/eukaroytic branch. Nevertheless, including the viral world into the picture of the tree of life may thus provide us with precious insights into our most distant past since the invention and spread potential of viruses may have played a key role in early evolution.
现代生物学最重要的成果之一就是证明了生命的统一性。事实上,所有生物都是一个独特祖先的后代,这个祖先通常被称为露卡(最后一个普遍共同祖先)。大约30年前卡尔·乌斯发现,我们星球上目前的生命只能分为三个域:两个是原核生物域(古菌域和细菌域),一个是真核生物域(真核生物域),这催生了一个新的研究领域,旨在确定露卡的本质。如今,由于基因组数据的积累,我们可以回溯过去,通过比较现代生物的共同特征来推断露卡的一些特征。例如,现在很清楚露卡是一种具有细胞质膜的细胞生物,并且它已经拥有相当复杂的翻译装置。然而,从比较基因组学推断露卡的其他特征就没那么直接了:例如,DNA复制的一些关键分子机制在这三个域中是非同源的,它们的分布常常令人困惑。这一证据被这样一种假说的支持者所接受,即露卡拥有一个RNA基因组,在三个生命域分化后,DNA对其的取代以及相应分子系统的出现是在这三个域中独立发生的。然而,另一种同样可能的情况是,露卡拥有一个DNA基因组,随后在细菌分支或古菌/真核生物分支中,其DNA复制系统被非同源的对应物所取代。然而,将病毒世界纳入生命之树的图景可能会为我们提供关于最遥远过去的宝贵见解,因为病毒的发明和传播潜力可能在早期进化中发挥了关键作用。