CASPUR, Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Università e Ricerca, Via dei Tizii, 6/b, 00185 Roma, Italy.
J Phys Chem B. 2010 May 27;114(20):6770-8. doi: 10.1021/jp1015824.
The low-lying valence electronic excitations of the topotecan anticancer drug, in two stable lactone forms, have been addressed in infinite dilute aqueous solution by combining time-dependent density functional theory calculations with nanoseconds time-scale classical molecular dynamics simulations at 298 K. The effects of the surrounding and fluctuating classical environment on the investigated topotecan forms are included in a perturbed electronic Hamiltonian, which is computed, and then diagonalized, at each frame stored during the molecular dynamics sampling in explicit solution. Current results clearly indicate that, at moderately acidic and physiological conditions, the valence UV-vis absorption spectra of topotecan drug are strongly affected by the surrounding dielectric media and by its perturbing trajectory as arising from finite-temperature fluctuations and supramolecular interactions. Furthermore, the extension of the proposed computational study to hydrated topotecan complexes in liquid water shows that all of the experimentally detected UV-vis spectroscopic features in solution are accurately reproduced only when direct solute-solvent intermolecular interactions are also explicitly taken into account in our simulating scenario. Finally, the present investigation opens up a chance regarding the computational prediction of the UV-vis absorption spectra of topotecan interacting, in silico, with the topoisomerase-DNA binary complex in physiological conditions (i.e., water dilute solution, room temperature).
本文采用时间相关密度泛函理论计算结合 298K 下纳秒时间尺度经典分子动力学模拟,研究了两种稳定内酯形式的拓扑替康抗癌药物在无限稀水溶液中的低占据价电子激发。在每个分子动力学采样的存储帧中,通过计算并对角化包含在受扰电子哈密顿量中的周围和波动经典环境对被研究拓扑替康形式的影响,从而将其包含在受扰电子哈密顿量中。目前的结果清楚地表明,在适度酸性和生理条件下,拓扑替康药物的价紫外可见吸收光谱强烈受到周围介电介质的影响,并受到有限温度波动和超分子相互作用引起的轨道扰动的影响。此外,将所提出的计算研究扩展到水合拓扑替康络合物在液态水中的情况表明,只有当我们的模拟方案中还明确考虑了直接的溶质-溶剂分子间相互作用时,才能准确再现溶液中所有实验检测到的紫外可见光谱特征。最后,本研究为拓扑替康与拓扑异构酶-DNA 二元复合物在生理条件(即水稀溶液、室温)下相互作用的计算预测提供了机会。