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细菌亮氨酰-tRNA 合成酶的氨酰化和校对功能循环的结构动力学。

Structural dynamics of the aminoacylation and proofreading functional cycle of bacterial leucyl-tRNA synthetase.

机构信息

European Molecular Biology Laboratory (EMBL), Grenoble Outstation and Unit of Virus Host-Cell Interactions, University of Grenoble-EMBL-Centre National de la Recherche Scientifique, Grenoble, France.

出版信息

Nat Struct Mol Biol. 2012 Jun 10;19(7):677-84. doi: 10.1038/nsmb.2317.

Abstract

Leucyl-tRNA synthetase (LeuRS) produces error-free leucyl-tRNA(Leu) by coordinating translocation of the 3' end of (mis-)charged tRNAs from its synthetic site to a separate proofreading site for editing. Here we report cocrystal structures of the Escherichia coli LeuRS-tRNA(Leu) complex in the aminoacylation or editing conformations, showing that translocation involves correlated rotations of four flexibly linked LeuRS domains. This pivots the tRNA to guide its charged 3' end from the closed aminoacylation state to the editing site. The editing domain unexpectedly stabilizes the tRNA during aminoacylation, and a large rotation of the leucine-specific domain positions the conserved KMSKS loop to bind the 3' end of the tRNA, promoting catalysis. Our results give new insight into the structural dynamics of a molecular machine that is essential for accurate protein synthesis.

摘要

亮氨酰-tRNA 合成酶 (LeuRS) 通过协调将(错配)带电荷的 tRNA 的 3' 端从其合成位点转移到单独的校对位点进行编辑,从而产生无错误的亮氨酰-tRNA(Leu)。在这里,我们报告了大肠杆菌 LeuRS-tRNA(Leu) 复合物在氨酰化或编辑构象下的共晶结构,显示转位涉及四个灵活连接的 LeuRS 结构域的相关旋转。这使 tRNA 旋转,将其带电荷的 3' 端从封闭的氨酰化状态引导至编辑位点。令人惊讶的是,编辑结构域在氨酰化过程中稳定了 tRNA,亮氨酸特异性结构域的大旋转将保守的 KMSKS 环定位到 tRNA 的 3' 端,促进了催化。我们的结果为这个对于准确的蛋白质合成至关重要的分子机器的结构动态提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9cae/3392462/bb6ee4e4cd4c/nihms374718f1.jpg

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