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ToxPi GUI:一个交互式可视化工具,用于透明集成来自不同证据来源的数据。

ToxPi GUI: an interactive visualization tool for transparent integration of data from diverse sources of evidence.

机构信息

National Center for Computational Toxicology, U.S. Environmental Protection Agency, Durham, NC, USA.

出版信息

Bioinformatics. 2013 Feb 1;29(3):402-3. doi: 10.1093/bioinformatics/bts686. Epub 2012 Nov 29.

Abstract

MOTIVATION

Scientists and regulators are often faced with complex decisions, where use of scarce resources must be prioritized using collections of diverse information. The Toxicological Prioritization Index (ToxPi™) was developed to enable integration of multiple sources of evidence on exposure and/or safety, transformed into transparent visual rankings to facilitate decision making. The rankings and associated graphical profiles can be used to prioritize resources in various decision contexts, such as testing chemical toxicity or assessing similarity of predicted compound bioactivity profiles. The amount and types of information available to decision makers are increasing exponentially, while the complex decisions must rely on specialized domain knowledge across multiple criteria of varying importance. Thus, the ToxPi bridges a gap, combining rigorous aggregation of evidence with ease of communication to stakeholders.

RESULTS

An interactive ToxPi graphical user interface (GUI) application has been implemented to allow straightforward decision support across a variety of decision-making contexts in environmental health. The GUI allows users to easily import and recombine data, then analyze, visualize, highlight, export and communicate ToxPi results. It also provides a statistical metric of stability for both individual ToxPi scores and relative prioritized ranks.

AVAILABILITY

The ToxPi GUI application, complete user manual and example data files are freely available from http://comptox.unc.edu/toxpi.php.

摘要

动机

科学家和监管机构经常面临复杂的决策,必须使用各种信息来优先考虑稀缺资源的使用。开发毒理学优先级指数 (ToxPi™) 是为了能够整合暴露和/或安全性的多个来源的证据,转化为透明的视觉排名,以方便决策。排名和相关的图形配置文件可用于在各种决策环境中优先分配资源,例如测试化学毒性或评估预测化合物生物活性谱的相似性。决策者可用的信息量和类型呈指数级增长,而复杂的决策必须依赖于多个具有不同重要性标准的专业领域知识。因此,ToxPi 弥合了差距,将证据的严格汇总与对利益相关者的轻松沟通相结合。

结果

已经实现了一个交互式 ToxPi 图形用户界面 (GUI) 应用程序,以允许在环境健康的各种决策环境中进行简单的决策支持。GUI 允许用户轻松导入和重新组合数据,然后分析、可视化、突出显示、导出和传达 ToxPi 结果。它还为单个 ToxPi 分数和相对优先级排名提供了稳定性的统计度量。

可用性

ToxPi GUI 应用程序、完整的用户手册和示例数据文件可从 http://comptox.unc.edu/toxpi.php 免费获得。

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