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异类:与相关的Spounavirinae W.Ph.和巴士底噬菌体相比,芽孢杆菌ACT噬菌体CP-51具有不同寻常的特性。

The odd one out: Bacillus ACT bacteriophage CP-51 exhibits unusual properties compared to related Spounavirinae W.Ph. and Bastille.

作者信息

Klumpp Jochen, Schmuki Martina, Sozhamannan Shanmuga, Beyer Wolfgang, Fouts Derrick E, Bernbach Vanessa, Calendar Richard, Loessner Martin J

机构信息

Institute of Food, Nutrition and Health, ETH Zurich, Schmelzbergstrasse 7, 8092 Zurich, Switzerland.

Institute of Food, Nutrition and Health, ETH Zurich, Schmelzbergstrasse 7, 8092 Zurich, Switzerland.

出版信息

Virology. 2014 Aug;462-463:299-308. doi: 10.1016/j.virol.2014.06.012. Epub 2014 Jul 8.

Abstract

The Bacillus ACT group includes three important pathogenic species of Bacillus: anthracis, cereus and thuringiensis. We characterized three virulent bacteriophages, Bastille, W.Ph. and CP-51, that infect various strains of these three species. We have determined the complete genome sequences of CP-51, W.Ph. and Bastille, and their physical genome structures. The CP-51 genome sequence could only be obtained using a combination of conventional and second and third next generation sequencing technologies - illustrating the problems associated with sequencing highly modified DNA. We present evidence that the generalized transduction facilitated by CP-51 is independent of a specific genome structure, but likely due to sporadic packaging errors of the terminase. There is clear correlation of the genetic and morphological features of these phages validating their placement in the Spounavirinae subfamily (SPO1-related phages) of the Myoviridae. This study also provides tools for the development of phage-based diagnostics/therapeutics for this group of pathogens.

摘要

芽孢杆菌ACT组包括芽孢杆菌属的三个重要致病物种:炭疽芽孢杆菌、蜡样芽孢杆菌和苏云金芽孢杆菌。我们鉴定了三种能感染这三个物种不同菌株的烈性噬菌体,即巴士底狱噬菌体、W.Ph.噬菌体和CP-51噬菌体。我们已经确定了CP-51噬菌体、W.Ph.噬菌体和巴士底狱噬菌体的完整基因组序列及其物理基因组结构。CP-51噬菌体的基因组序列只能通过结合传统测序技术以及第二代和第三代新一代测序技术才能获得,这说明了与高度修饰DNA测序相关的问题。我们提供的证据表明,CP-51噬菌体介导的广义转导与特定的基因组结构无关,而可能是由于末端酶的偶发包装错误。这些噬菌体的遗传和形态特征存在明显的相关性,证实了它们在肌尾噬菌体科的Spounavirinae亚科(与SPO1相关的噬菌体)中的分类地位。这项研究还为开发针对这组病原体的基于噬菌体的诊断/治疗方法提供了工具。

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