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引言:生物学中的金属:α-酮戊二酸/铁依赖性双加氧酶

Introduction: Metals in Biology: α-Ketoglutarate/Iron-Dependent Dioxygenases.

作者信息

Guengerich F Peter

机构信息

Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232-0146.

出版信息

J Biol Chem. 2015 Aug 21;290(34):20700-20701. doi: 10.1074/jbc.R115.675652. Epub 2015 Jul 7.

Abstract

Four minireviews deal with aspects of the α-ketoglutarate/iron-dependent dioxygenases in this eighth Thematic Series on Metals in Biology. The minireviews cover a general introduction and synopsis of the current understanding of mechanisms of catalysis, the roles of these dioxygenases in post-translational protein modification and de-modification, the roles of the ten-eleven translocation (Tet) dioxygenases in the modification of methylated bases (5mC, T) in DNA relevant to epigenetic mechanisms, and the roles of the AlkB-related dioxygenases in the repair of damaged DNA and RNA. The use of α-ketoglutarate (alternatively termed 2-oxoglutarate) as a co-substrate in so many oxidation reactions throughout much of nature is notable and has surprisingly emerged from biochemical and genomic analysis. About 60 of these enzymes are now recognized in humans, and a number have been identified as having critical functions.

摘要

在这个关于生物学中金属的第八个主题系列中,四篇小型综述探讨了α-酮戊二酸/铁依赖性双加氧酶的各个方面。这些小型综述涵盖了对催化机制当前理解的一般性介绍和概述,这些双加氧酶在蛋白质翻译后修饰和去修饰中的作用,十一易位(Tet)双加氧酶在与表观遗传机制相关的DNA甲基化碱基(5mC、T)修饰中的作用,以及AlkB相关双加氧酶在受损DNA和RNA修复中的作用。在自然界的许多氧化反应中,使用α-酮戊二酸(也称为2-氧代戊二酸)作为共底物是值得注意的,并且这一现象已从生化和基因组分析中惊人地显现出来。目前在人类中已识别出约60种此类酶,并且已鉴定出一些具有关键功能。

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2
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J Biol Chem. 2015 Aug 21;290(34):20712-20722. doi: 10.1074/jbc.R115.662627. Epub 2015 Jul 7.
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