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突尼斯(莫纳斯提尔、马赫迪耶,2011 - 2013年)肠道病毒脑膜炎:法国境内共同传播的病毒变体鉴定

Enterovirus meningitis in Tunisia (Monastir, Mahdia, 2011-2013): identification of virus variants cocirculating in France.

作者信息

Othman Ines, Volle Romain, Elargoubi Aida, Guediche Mohamed Neji, Chakroun Mohamed, Sfar Mohamed Tahar, Pereira Bruno, Peigue-Lafeuille Hélène, Aouni Mahjoub, Archimbaud Christine, Bailly Jean-Luc

机构信息

Faculty of Pharmacy, LR99-ES27, Monastir, Tunisia; Faculty of Sciences of Bizerte, University of Carthage, Tunisia.

Université d'Auvergne, EPIE, EA 4843, Clermont-Ferrand, France; CHU Clermont-Ferrand, Service de Virologie, Clermont-Ferrand, France.

出版信息

Diagn Microbiol Infect Dis. 2016 Feb;84(2):116-22. doi: 10.1016/j.diagmicrobio.2015.10.019. Epub 2015 Oct 28.

Abstract

Acute enterovirus (EV) meningitis is a frequent cause of hospitalisation, and over 100 EV serotypes may be involved. A total of 215 patients of all ages with meningitis signs were investigated in 2 Tunisian hospitals. Their cerebrospinal fluid (CSF) was analysed retrospectively for EVs with a TaqMan real-time RT-qPCR. The virus strains were typed, and their evolutionary relationships were determined by Bayesian phylogenetic methods. An EV genome was detected in 21/215 patients (9.8%). The CSF viral loads ranged from 3.27 to 5.63 log10 genome copies/mL. The strains were identified in 13/21 patients and assigned to EV-B types. Viruses identified in Tunisian patients were genetically related to variants detected in France. The viral loads were similar in Tunisian and French patients for most EV types. The phylogenetic data and viral loads determined in Tunisian and French patients suggest that close EV variants were involved in aseptic meningitis in the 2 countries over a same period.

摘要

急性肠道病毒(EV)脑膜炎是住院治疗的常见病因,可能涉及100多种EV血清型。在突尼斯的两家医院对215名有脑膜炎体征的各年龄段患者进行了调查。采用TaqMan实时逆转录定量聚合酶链反应(RT-qPCR)对他们的脑脊液(CSF)进行回顾性分析以检测肠道病毒。对病毒株进行分型,并通过贝叶斯系统发育方法确定其进化关系。在215名患者中有21名(9.8%)检测到EV基因组。脑脊液病毒载量范围为3.27至5.63 log10基因组拷贝/毫升。在21名患者中的13名鉴定出毒株,并归类为B型肠道病毒。在突尼斯患者中鉴定出的病毒与在法国检测到的变异株具有基因相关性。对于大多数肠道病毒类型,突尼斯患者和法国患者的病毒载量相似。在突尼斯和法国患者中确定的系统发育数据和病毒载量表明,同期这两个国家的无菌性脑膜炎涉及密切相关的肠道病毒变异株。

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