Clancy Colleen E, An Gary, Cannon William R, Liu Yaling, May Elebeoba E, Ortoleva Peter, Popel Aleksander S, Sluka James P, Su Jing, Vicini Paolo, Zhou Xiaobo, Eckmann David M
Department of Pharmacology, University of California, Davis, CA, USA.
Department of Surgery, University of Chicago, Chicago, IL, USA.
Ann Biomed Eng. 2016 Sep;44(9):2591-610. doi: 10.1007/s10439-016-1563-0. Epub 2016 Feb 17.
A wide range of length and time scales are relevant to pharmacology, especially in drug development, drug design and drug delivery. Therefore, multiscale computational modeling and simulation methods and paradigms that advance the linkage of phenomena occurring at these multiple scales have become increasingly important. Multiscale approaches present in silico opportunities to advance laboratory research to bedside clinical applications in pharmaceuticals research. This is achievable through the capability of modeling to reveal phenomena occurring across multiple spatial and temporal scales, which are not otherwise readily accessible to experimentation. The resultant models, when validated, are capable of making testable predictions to guide drug design and delivery. In this review we describe the goals, methods, and opportunities of multiscale modeling in drug design and development. We demonstrate the impact of multiple scales of modeling in this field. We indicate the common mathematical and computational techniques employed for multiscale modeling approaches used in pharmacometric and systems pharmacology models in drug development and present several examples illustrating the current state-of-the-art models for (1) excitable systems and applications in cardiac disease; (2) stem cell driven complex biosystems; (3) nanoparticle delivery, with applications to angiogenesis and cancer therapy; (4) host-pathogen interactions and their use in metabolic disorders, inflammation and sepsis; and (5) computer-aided design of nanomedical systems. We conclude with a focus on barriers to successful clinical translation of drug development, drug design and drug delivery multiscale models.
广泛的长度和时间尺度与药理学相关,尤其是在药物开发、药物设计和药物递送方面。因此,推进这些多尺度现象之间联系的多尺度计算建模与仿真方法及范式变得越来越重要。多尺度方法在计算机模拟方面提供了机会,可将药物研究中的实验室研究推进到床边临床应用。这可通过建模能力来实现,以揭示跨越多个空间和时间尺度发生的现象,而这些现象通过实验难以轻易获得。经过验证后,所得模型能够做出可测试的预测,以指导药物设计和递送。在本综述中,我们描述了药物设计与开发中多尺度建模的目标、方法和机会。我们展示了该领域多尺度建模的影响。我们指出了在药物开发的药代动力学和系统药理学模型中用于多尺度建模方法的常见数学和计算技术,并给出了几个例子来说明当前的前沿模型,这些模型用于(1)可兴奋系统及其在心脏病中的应用;(2)干细胞驱动的复杂生物系统;(3)纳米颗粒递送及其在血管生成和癌症治疗中的应用;(4)宿主 - 病原体相互作用及其在代谢紊乱、炎症和败血症中的应用;以及(5)纳米医学系统的计算机辅助设计。我们最后重点讨论了药物开发、药物设计和药物递送多尺度模型成功临床转化的障碍。