Suppr超能文献

临床中的多尺度建模:药物设计与开发

Multiscale Modeling in the Clinic: Drug Design and Development.

作者信息

Clancy Colleen E, An Gary, Cannon William R, Liu Yaling, May Elebeoba E, Ortoleva Peter, Popel Aleksander S, Sluka James P, Su Jing, Vicini Paolo, Zhou Xiaobo, Eckmann David M

机构信息

Department of Pharmacology, University of California, Davis, CA, USA.

Department of Surgery, University of Chicago, Chicago, IL, USA.

出版信息

Ann Biomed Eng. 2016 Sep;44(9):2591-610. doi: 10.1007/s10439-016-1563-0. Epub 2016 Feb 17.

Abstract

A wide range of length and time scales are relevant to pharmacology, especially in drug development, drug design and drug delivery. Therefore, multiscale computational modeling and simulation methods and paradigms that advance the linkage of phenomena occurring at these multiple scales have become increasingly important. Multiscale approaches present in silico opportunities to advance laboratory research to bedside clinical applications in pharmaceuticals research. This is achievable through the capability of modeling to reveal phenomena occurring across multiple spatial and temporal scales, which are not otherwise readily accessible to experimentation. The resultant models, when validated, are capable of making testable predictions to guide drug design and delivery. In this review we describe the goals, methods, and opportunities of multiscale modeling in drug design and development. We demonstrate the impact of multiple scales of modeling in this field. We indicate the common mathematical and computational techniques employed for multiscale modeling approaches used in pharmacometric and systems pharmacology models in drug development and present several examples illustrating the current state-of-the-art models for (1) excitable systems and applications in cardiac disease; (2) stem cell driven complex biosystems; (3) nanoparticle delivery, with applications to angiogenesis and cancer therapy; (4) host-pathogen interactions and their use in metabolic disorders, inflammation and sepsis; and (5) computer-aided design of nanomedical systems. We conclude with a focus on barriers to successful clinical translation of drug development, drug design and drug delivery multiscale models.

摘要

广泛的长度和时间尺度与药理学相关,尤其是在药物开发、药物设计和药物递送方面。因此,推进这些多尺度现象之间联系的多尺度计算建模与仿真方法及范式变得越来越重要。多尺度方法在计算机模拟方面提供了机会,可将药物研究中的实验室研究推进到床边临床应用。这可通过建模能力来实现,以揭示跨越多个空间和时间尺度发生的现象,而这些现象通过实验难以轻易获得。经过验证后,所得模型能够做出可测试的预测,以指导药物设计和递送。在本综述中,我们描述了药物设计与开发中多尺度建模的目标、方法和机会。我们展示了该领域多尺度建模的影响。我们指出了在药物开发的药代动力学和系统药理学模型中用于多尺度建模方法的常见数学和计算技术,并给出了几个例子来说明当前的前沿模型,这些模型用于(1)可兴奋系统及其在心脏病中的应用;(2)干细胞驱动的复杂生物系统;(3)纳米颗粒递送及其在血管生成和癌症治疗中的应用;(4)宿主 - 病原体相互作用及其在代谢紊乱、炎症和败血症中的应用;以及(5)纳米医学系统的计算机辅助设计。我们最后重点讨论了药物开发、药物设计和药物递送多尺度模型成功临床转化的障碍。

相似文献

1
Multiscale Modeling in the Clinic: Drug Design and Development.
Ann Biomed Eng. 2016 Sep;44(9):2591-610. doi: 10.1007/s10439-016-1563-0. Epub 2016 Feb 17.
2
How can machine learning and multiscale modeling benefit ocular drug development?
Adv Drug Deliv Rev. 2023 May;196:114772. doi: 10.1016/j.addr.2023.114772. Epub 2023 Mar 10.
3
Predictive Design and Analysis of Drug Transport by Multiscale Computational Models Under Uncertainty.
Pharm Res. 2023 Feb;40(2):501-523. doi: 10.1007/s11095-022-03298-8. Epub 2022 Jun 1.
5
Mathematical and computational modeling of nano-engineered drug delivery systems.
J Control Release. 2019 Aug 10;307:150-165. doi: 10.1016/j.jconrel.2019.06.014. Epub 2019 Jun 20.
6
Release from Polymeric Core/Shell Nanoparticles through the Lens of Multiscale Modeling.
Mol Pharm. 2024 Jun 3;21(6):2684-2698. doi: 10.1021/acs.molpharmaceut.3c00806. Epub 2024 Apr 30.
7
From tumour perfusion to drug delivery and clinical translation of in silico cancer models.
Methods. 2021 Jan;185:82-93. doi: 10.1016/j.ymeth.2020.02.010. Epub 2020 Mar 5.
8
Ultrasound-mediated nano-sized drug delivery systems for cancer treatment: Multi-scale and multi-physics computational modeling.
Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2024 Jan-Feb;16(1):e1913. doi: 10.1002/wnan.1913. Epub 2023 Jul 20.
9
Simulating cancer growth with multiscale agent-based modeling.
Semin Cancer Biol. 2015 Feb;30:70-8. doi: 10.1016/j.semcancer.2014.04.001. Epub 2014 May 2.
10
An analysis platform for multiscale hydrogeologic modeling with emphasis on hybrid multiscale methods.
Ground Water. 2015 Jan-Feb;53(1):38-56. doi: 10.1111/gwat.12179. Epub 2014 Mar 13.

引用本文的文献

1
Computational modeling of drug-eluting balloons in peripheral artery disease: Mechanisms, optimization, and translational insights.
Comput Struct Biotechnol J. 2025 Aug 7;27:3640-3653. doi: 10.1016/j.csbj.2025.08.005. eCollection 2025.
4
Agent-based modeling in cancer biomedicine: applications and tools for calibration and validation.
Cancer Biol Ther. 2024 Dec 31;25(1):2344600. doi: 10.1080/15384047.2024.2344600. Epub 2024 Apr 28.
5
Engineering innovations in medicine and biology: Revolutionizing patient care through mechanical solutions.
Heliyon. 2024 Feb 15;10(4):e26154. doi: 10.1016/j.heliyon.2024.e26154. eCollection 2024 Feb 29.
6
Predicting Spray Dried Dispersion Particle Size Via Machine Learning Regression Methods.
Pharm Res. 2022 Dec;39(12):3223-3239. doi: 10.1007/s11095-022-03370-3. Epub 2022 Aug 19.
7
Bioavailability by design - Vitamin D liposomal delivery vehicles.
Nanomedicine. 2022 Jul;43:102552. doi: 10.1016/j.nano.2022.102552. Epub 2022 Mar 26.
8
Molecular determinants of pro-arrhythmia proclivity of d- and l-sotalol via a multi-scale modeling pipeline.
J Mol Cell Cardiol. 2021 Sep;158:163-177. doi: 10.1016/j.yjmcc.2021.05.015. Epub 2021 May 29.
9
Mechanisms of flecainide induced negative inotropy: An in silico study.
J Mol Cell Cardiol. 2021 Sep;158:26-37. doi: 10.1016/j.yjmcc.2021.05.007. Epub 2021 May 15.
10
Atomistic Basis of Microtubule Dynamic Instability Assessed Via Multiscale Modeling.
Ann Biomed Eng. 2021 Jul;49(7):1716-1734. doi: 10.1007/s10439-020-02715-6. Epub 2021 Feb 3.

本文引用的文献

1
Computational Studies of the Intestinal Host-Microbiota Interactome.
Computation (Basel). 2015 Mar;3(1):2-28. doi: 10.3390/computation3010002. Epub 2015 Jan 14.
2
Circadian Gating of the Mammalian Cell Cycle Restriction Point: A Mathematical Analysis.
IEEE Life Sci Lett. 2015 Jun;1(1):11-14. doi: 10.1109/LLS.2015.2449511. Epub 2015 Jul 13.
3
Pharmacokinetics of Anti-VEGF Agent Aflibercept in Cancer Predicted by Data-Driven, Molecular-Detailed Model.
CPT Pharmacometrics Syst Pharmacol. 2015 Nov;4(11):641-9. doi: 10.1002/psp4.12040. Epub 2015 Oct 9.
6
A polarizable empirical force field for molecular dynamics simulation of liquid hydrocarbons.
J Comput Chem. 2014 Apr 15;35(10):789-801. doi: 10.1002/jcc.23551. Epub 2014 Feb 19.
7
Modeling and Simulation Approaches for Cardiovascular Function and Their Role in Safety Assessment.
CPT Pharmacometrics Syst Pharmacol. 2015 Mar;4(3):e00018. doi: 10.1002/psp4.18. Epub 2015 Mar 11.
8
Broad spectrum assessment of the epitope fluctuation--Immunogenicity hypothesis.
Vaccine. 2015 Nov 4;33(44):5945-9. doi: 10.1016/j.vaccine.2015.06.111. Epub 2015 Jul 14.
9
A Computational, Tissue-Realistic Model of Pressure Ulcer Formation in Individuals with Spinal Cord Injury.
PLoS Comput Biol. 2015 Jun 25;11(6):e1004309. doi: 10.1371/journal.pcbi.1004309. eCollection 2015 Jun.
10
Molecular mechanism matters: Benefits of mechanistic computational models for drug development.
Pharmacol Res. 2015 Sep;99:149-54. doi: 10.1016/j.phrs.2015.06.002. Epub 2015 Jun 18.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验