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采用靶向测序技术检测早期非小细胞肺癌患者的循环肿瘤 DNA

Circulating Tumor DNA Detection in Early-Stage Non-Small Cell Lung Cancer Patients by Targeted Sequencing.

机构信息

Department of Thoracic Surgery, Peking University People's Hospital, Beijing, China.

Department of Bioinformatics, San Valley Biotechnology Incorporated, Beijing, China.

出版信息

Sci Rep. 2016 Aug 24;6:31985. doi: 10.1038/srep31985.

Abstract

Circulating tumor DNA (ctDNA) isolated from peripheral blood has recently been shown to be an alternative source to detect gene mutations in primary tumors; however, most previous studies have focused on advanced stage cancers, and few have evaluated ctDNA detection in early-stage lung cancer. In the present study, blood and tumor samples were collected prospectively from 58 early-stage non-small lung cancer (NSCLC) patients (stages IA, IB, and IIA) and a targeted sequencing approach was used to detect somatic driver mutations in matched tumor DNA (tDNA) and plasma ctDNA. We identified frequent driver mutations in plasma ctDNA and tDNA in EGFR, KRAS, PIK3CA, and TP53, and less frequent mutations in other genes, with an overall study concordance of 50.4% and sensitivity and specificity of 53.8% and 47.3%, respectively. Cell-free (cfDNA) concentrations were found to be significantly associated with some clinical features, including tumor stage and subtype. Importantly, the presence of cfDNA had a higher positive predictive value than that of currently used protein tumor biomarkers. This study demonstrates the feasibility of identifying plasma ctDNA mutations in the earliest stage lung cancer patients via targeted sequencing, demonstrating a potential utility of targeted sequencing of ctDNA in the clinical management of NSCLC.

摘要

循环肿瘤 DNA(ctDNA)从外周血中分离出来,最近被证明是一种替代来源,可用于检测原发性肿瘤中的基因突变;然而,大多数先前的研究都集中在晚期癌症上,很少有研究评估 ctDNA 在早期肺癌中的检测。在本研究中,前瞻性地采集了 58 例早期非小细胞肺癌(NSCLC)患者(IA 期、IB 期和 IIA 期)的血液和肿瘤样本,并使用靶向测序方法检测匹配的肿瘤 DNA(tDNA)和血浆 ctDNA 中的体细胞驱动突变。我们在血浆 ctDNA 和 tDNA 中鉴定了 EGFR、KRAS、PIK3CA 和 TP53 中的常见驱动突变,以及其他基因中的罕见突变,总体研究一致性为 50.4%,灵敏度和特异性分别为 53.8%和 47.3%。发现无细胞(cfDNA)浓度与一些临床特征,包括肿瘤分期和亚型显著相关。重要的是,cfDNA 的存在比目前使用的蛋白肿瘤标志物具有更高的阳性预测值。本研究通过靶向测序证明了在最早阶段的肺癌患者中识别血浆 ctDNA 突变的可行性,表明 ctDNA 的靶向测序在 NSCLC 的临床管理中有潜在的应用价值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a3f/4995492/1a08186b2012/srep31985-f1.jpg

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