BFS, Institute of Parasitology, Justus Liebig University, 35392 Giessen, Germany.
Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK.
Sci Data. 2017 Aug 22;4:170118. doi: 10.1038/sdata.2017.118.
RNA-Seq has proven excellence in providing information about the regulation and transcript levels of genes. We used this method for profiling genes in the flatworm Schistosoma mansoni. This parasite causes schistosomiasis, an infectious disease of global importance for human and animals. The pathology of schistosomiasis is associated with the eggs, which are synthesized as a final consequence of male and female adults pairing. The male induces processes in the female that lead to the full development of its gonads as a prerequisite for egg production. Unpaired females remain sexually immature. Based on an organ-isolation method we obtained gonad tissue for RNA extraction from paired and unpaired schistosomes, with whole adults included as controls. From a total of 23 samples, we used high-throughput cDNA sequencing (RNA-Seq) on the Illumina platform to profile gene expression between genders and tissues, with and without pairing influence. The data obtained provide a wealth of information on the reproduction biology of schistosomes and a rich resource for exploitation through basic and applied research activities.
RNA-Seq 在提供基因调控和转录水平的信息方面表现出色。我们使用这种方法来分析扁形动物曼氏血吸虫中的基因。这种寄生虫会引起血吸虫病,这是一种对人类和动物都具有全球重要性的传染病。血吸虫病的病理学与卵有关,这些卵是雌雄成虫配对的最终结果。雄性会诱导雌性发生一系列过程,从而使其性腺完全发育,这是产卵的前提条件。未配对的雌性仍然保持性不成熟。基于器官分离方法,我们从配对和未配对的血吸虫中获取了用于 RNA 提取的性腺组织,同时包括了整个成虫作为对照。在总共 23 个样本中,我们使用 Illumina 平台上的高通量 cDNA 测序(RNA-Seq)来分析有配对和无配对影响的性别和组织之间的基因表达。获得的数据提供了大量关于血吸虫生殖生物学的信息,是基础和应用研究活动的宝贵资源。