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PDBsum:蛋白质数据库(PDB)条目的结构摘要。

PDBsum: Structural summaries of PDB entries.

作者信息

Laskowski Roman A, Jabłońska Jagoda, Pravda Lukáš, Vařeková Radka Svobodová, Thornton Janet M

机构信息

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom.

Laboratory of Bioinformatics and Systems Biology, Centre of New Technologies, University of Warsaw, 02-089, Warsaw, Poland.

出版信息

Protein Sci. 2018 Jan;27(1):129-134. doi: 10.1002/pro.3289. Epub 2017 Oct 27.

Abstract

PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB). The analyses are primarily image-based and include protein secondary structure, protein-ligand and protein-DNA interactions, PROCHECK analyses of structural quality, and many others. The 3D structures can be viewed interactively in RasMol, PyMOL, and a JavaScript viewer called 3Dmol.js. Users can upload their own PDB files and obtain a set of password-protected PDBsum analyses for each. The server is freely accessible to all at: http://www.ebi.ac.uk/pdbsum.

摘要

PDBsum是一个网络服务器,提供蛋白质数据库(PDB)中条目的结构信息。分析主要基于图像,包括蛋白质二级结构、蛋白质-配体和蛋白质-DNA相互作用、结构质量的PROCHECK分析等。三维结构可以在RasMol、PyMOL以及一个名为3Dmol.js的JavaScript查看器中进行交互式查看。用户可以上传自己的PDB文件,并为每个文件获得一组受密码保护的PDBsum分析结果。所有人均可通过以下网址免费访问该服务器:http://www.ebi.ac.uk/pdbsum

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8505/5734310/79873d2ce030/PRO-27-129-g001.jpg

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