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Pf16和phiPMW:拓展恶臭假单胞菌噬菌体的领域

Pf16 and phiPMW: Expanding the realm of Pseudomonas putida bacteriophages.

作者信息

Magill Damian J, Krylov Victor N, Shaburova Olga V, McGrath John W, Allen Christopher C R, Quinn John P, Kulakov Leonid A

机构信息

Queen's University Belfast, School of Biological Sciences, Medical Biology Centre, Belfast, Northern Ireland.

Department of Microbiology, Laboratory for Genetics of Bacteriophages, I.I. Mechnikov Research Institute for Vaccines and Sera, Moscow, Russia.

出版信息

PLoS One. 2017 Sep 6;12(9):e0184307. doi: 10.1371/journal.pone.0184307. eCollection 2017.

Abstract

We present the analysis of two novel Pseudomonas putida phages, pf16 and phiPMW. Pf16 represents a peripherally related T4-like phage, and is the first of its kind infecting a Pseudomonad, with evidence suggesting cyanophage origins. Extensive divergence has resulted in pf16 occupying a newly defined clade designated as the pf16-related phages, lying at the interface of the Schizo T-Evens and Exo T-Evens. Recombination with an ancestor of the P. putida phage AF is likely responsible for the tropism of this phage. phiPMW represents a completely novel Pseudomonas phage with a genome containing substantial genetic novelty through its many hypothetical proteins. Evidence suggests that this phage has been extensively shaped through gene transfer events and vertical evolution. Phylogenetics shows that this phage has an evolutionary history involving FelixO1-related viruses but is in itself highly distinct from this group.

摘要

我们展示了对两种新型恶臭假单胞菌噬菌体pf16和phiPMW的分析。Pf16代表一种外周相关的T4样噬菌体,是感染假单胞菌的此类噬菌体中的第一个,有证据表明其起源于蓝藻噬菌体。广泛的分化导致pf16占据了一个新定义的分支,称为pf16相关噬菌体,位于裂殖T偶数噬菌体和外切T偶数噬菌体的界面处。与恶臭假单胞菌噬菌体AF的祖先发生重组可能是该噬菌体具有嗜性的原因。phiPMW代表一种全新的假单胞菌噬菌体,其基因组通过许多假设蛋白包含大量遗传新奇性。有证据表明,该噬菌体通过基因转移事件和垂直进化受到了广泛塑造。系统发育学表明,该噬菌体具有涉及FelixO1相关病毒的进化历史,但本身与该群体高度不同。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6610/5587285/3837a6818654/pone.0184307.g001.jpg

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