Swiss National Centre of Competence in Research, NCCR TransCure, University of Bern, Bern, Switzerland.
Institute of Biochemistry and Molecular Medicine, Faculty of Medicine, University of Bern, Bern, Switzerland.
BMC Genomics. 2018 Mar 2;19(1):173. doi: 10.1186/s12864-018-4518-z.
Gestational disorders such as intrauterine growth restriction (IUGR) and pre-eclampsia (PE) are main causes of poor perinatal outcomes worldwide. Both diseases are related with impaired materno-fetal nutrient transfer, but the crucial transport mechanisms underlying IUGR and PE are not fully elucidated. In this study, we aimed to identify membrane transporters highly associated with transplacental nutrient deficiencies in IUGR/PE.
In silico analyses on the identification of differentially expressed nutrient transporters were conducted using seven eligible microarray datasets (from Gene Expression Omnibus), encompassing control and IUGR/PE placental samples. Thereby 46 out of 434 genes were identified as potentially interesting targets. They are involved in the fetal provision with amino acids, carbohydrates, lipids, vitamins and microelements. Targets of interest were clustered into a substrate-specific interaction network by using Search Tool for the Retrieval of Interacting Genes. The subsequent wet-lab validation was performed using quantitative RT-PCR on placentas from clinically well-characterized IUGR/PE patients (IUGR, n = 8; PE, n = 5; PE+IUGR, n = 10) and controls (term, n = 13; preterm, n = 7), followed by 2D-hierarchical heatmap generation. Statistical evaluation using Kruskal-Wallis tests was then applied to detect significantly different expression patterns, while scatter plot analysis indicated which transporters were predominantly influenced by IUGR or PE, or equally affected by both diseases. Identified by both methods, three overlapping targets, SLC7A7, SLC38A5 (amino acid transporters), and ABCA1 (cholesterol transporter), were further investigated at the protein level by western blotting. Protein analyses in total placental tissue lysates and membrane fractions isolated from disease and control placentas indicated an altered functional activity of those three nutrient transporters in IUGR/PE.
Combining bioinformatic analysis, molecular biological experiments and mathematical diagramming, this study has demonstrated systematic alterations of nutrient transporter expressions in IUGR/PE. Among 46 initially targeted transporters, three significantly regulated genes were further investigated based on the severity and the disease specificity for IUGR and PE. Confirmed by mRNA and protein expression, the amino acid transporters SLC7A7 and SLC38A5 showed marked differences between controls and IUGR/PE and were regulated by both diseases. In contrast, ABCA1 may play an exclusive role in the development of PE.
宫内生长受限(IUGR)和子痫前期(PE)等妊娠障碍是全球围产期结局不良的主要原因。这两种疾病都与母体-胎儿营养物质转移受损有关,但 IUGR 和 PE 中关键的转运机制尚未完全阐明。本研究旨在鉴定与 IUGR/PE 中胎盘营养物质缺乏高度相关的膜转运体。
使用来自基因表达综合数据库(GEO)的 7 个合格的微阵列数据集进行差异表达的营养转运体的计算机分析,其中包括对照和 IUGR/PE 胎盘样本。由此确定了 46 个可能是感兴趣的靶基因。它们涉及胎儿提供氨基酸、碳水化合物、脂质、维生素和微量元素。通过使用检索相互作用基因的工具(Search Tool for the Retrieval of Interacting Genes),将感兴趣的靶基因聚类为具有底物特异性的相互作用网络。随后,使用定量 RT-PCR 在临床特征明确的 IUGR/PE 患者(IUGR,n=8;PE,n=5;PE+IUGR,n=10)和对照组(足月,n=13;早产,n=7)的胎盘中进行湿实验室验证,随后生成 2D 层次热图。然后应用 Kruskal-Wallis 检验进行统计评估,以检测差异表达模式,而散点图分析则表明哪些转运体主要受 IUGR 或 PE 影响,或受两种疾病同等影响。两种方法均鉴定出 3 个重叠的靶基因 SLC7A7、SLC38A5(氨基酸转运体)和 ABCA1(胆固醇转运体),并通过蛋白质印迹法进一步在蛋白水平上进行研究。对疾病和对照组胎盘总胎盘组织裂解物和分离的膜部分进行蛋白分析表明,IUGR/PE 中这 3 种营养转运体的功能活性发生了改变。在最初靶向的 46 个转运体中,基于 IUGR 和 PE 的严重程度和疾病特异性,进一步研究了 3 个显著调节的基因。通过 mRNA 和蛋白表达证实,氨基酸转运体 SLC7A7 和 SLC38A5在对照组和 IUGR/PE 之间存在明显差异,并且受两种疾病的调节。相比之下,ABCA1 可能在 PE 的发展中起独特作用。