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InterPro 在 2019 年:提高蛋白质序列注释的覆盖范围、分类和访问。

InterPro in 2019: improving coverage, classification and access to protein sequence annotations.

机构信息

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

School of Computer Science, The University of Manchester, Manchester M13 9PL, UK.

出版信息

Nucleic Acids Res. 2019 Jan 8;47(D1):D351-D360. doi: 10.1093/nar/gky1100.

Abstract

The InterPro database (http://www.ebi.ac.uk/interpro/) classifies protein sequences into families and predicts the presence of functionally important domains and sites. Here, we report recent developments with InterPro (version 70.0) and its associated software, including an 18% growth in the size of the database in terms on new InterPro entries, updates to content, the inclusion of an additional entry type, refined modelling of discontinuous domains, and the development of a new programmatic interface and website. These developments extend and enrich the information provided by InterPro, and provide greater flexibility in terms of data access. We also show that InterPro's sequence coverage has kept pace with the growth of UniProtKB, and discuss how our evaluation of residue coverage may help guide future curation activities.

摘要

InterPro 数据库(http://www.ebi.ac.uk/interpro/)将蛋白质序列分类为家族,并预测功能重要域和位点的存在。在这里,我们报告了 InterPro(版本 70.0)及其相关软件的最新进展,包括数据库中新 InterPro 条目的数量增长了 18%,内容更新,增加了一种额外的条目类型,不连续域的建模得到了改进,以及新的编程接口和网站的开发。这些发展扩展和丰富了 InterPro 提供的信息,并在数据访问方面提供了更大的灵活性。我们还表明,InterPro 的序列覆盖率与 UniProtKB 的增长保持同步,并讨论了我们对残基覆盖率的评估如何帮助指导未来的注释活动。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3622/6323941/d9aa41d51b47/gky1100fig1.jpg

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