Qin Panpan, Zou Yuanqiang, Dai Ying, Luo Guangwen, Zhang Xiaowei, Xiao Liang
BGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, China.
BGI-Shenzhen, Shenzhen 518083, China.
Microorganisms. 2019 Mar 13;7(3):78. doi: 10.3390/microorganisms7030078.
Butyrate-producing bacteria can biosynthesize butyrate and alleviate inflammatory diseases. However, few studies have reported that the genus has the ability to produce butyric acid. Here, our study depicts a strain, which is a rod-shaped obligate anaerobe that is able to produce butyric acid. This microorganism was isolated from a human gut, and the optimal growth conditions were found to be 37 °C on PYG medium with pH 6.5. The 16S rRNA gene sequence demonstrated that this microorganism shared 99.93% similarity with . ATCC 25986, which was higher than the threshold (98.65%) for differentiating two species. Digital DNA⁻DNA hybridization and average nucleotide identity values also supported that this microorganism belonged to the species . Distinct phenotypic characteristics between TF06-26 and the type strain of . , such as the fermentation of D-lactose, D-fructose and D-maltose, positive growth under pH 5 and 0.2% (/) cholate, suggested this strain was a novel subspecies. Comparative genome analysis revealed that butyric acid kinase and phosphate butyryltransferase enzymes were coded exclusively by this strain, indicating a specific butyric acid-producing function of this . subspecies within the genus . Thus, subsp. subsp. nov. was proposed, with set strain TF06-26 (=CGMCC 1.5216 = DSM 105138) as the type strain.
产丁酸细菌可以生物合成丁酸并缓解炎症性疾病。然而,很少有研究报道该属具有产生丁酸的能力。在此,我们的研究描述了一株菌株,它是一种杆状专性厌氧菌,能够产生丁酸。这种微生物是从人类肠道中分离出来的,发现其最佳生长条件是在pH 6.5的PYG培养基上37℃培养。16S rRNA基因序列表明,这种微生物与ATCC 25986的相似度为99.93%,高于区分两个物种的阈值(98.65%)。数字DNA-DNA杂交和平均核苷酸同一性值也支持这种微生物属于该物种。TF06-26与该物种模式菌株之间不同的表型特征,如对D-乳糖、D-果糖和D-麦芽糖的发酵、在pH 5和0.2%(/)胆酸盐条件下的阳性生长,表明该菌株是一个新亚种。比较基因组分析表明,丁酸激酶和磷酸丁酰转移酶仅由该菌株编码,表明该属内这个亚种具有特定的产丁酸功能。因此,提出了新亚种,模式菌株为TF06-26(=CGMCC 1.5216 = DSM 105138)。