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一种新型产丁酸细菌亚种的鉴定。亚种。新种

Characterization a Novel Butyric Acid-Producing Bacterium Subsp. Subsp. Nov.

作者信息

Qin Panpan, Zou Yuanqiang, Dai Ying, Luo Guangwen, Zhang Xiaowei, Xiao Liang

机构信息

BGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, China.

BGI-Shenzhen, Shenzhen 518083, China.

出版信息

Microorganisms. 2019 Mar 13;7(3):78. doi: 10.3390/microorganisms7030078.

Abstract

Butyrate-producing bacteria can biosynthesize butyrate and alleviate inflammatory diseases. However, few studies have reported that the genus has the ability to produce butyric acid. Here, our study depicts a strain, which is a rod-shaped obligate anaerobe that is able to produce butyric acid. This microorganism was isolated from a human gut, and the optimal growth conditions were found to be 37 °C on PYG medium with pH 6.5. The 16S rRNA gene sequence demonstrated that this microorganism shared 99.93% similarity with . ATCC 25986, which was higher than the threshold (98.65%) for differentiating two species. Digital DNA⁻DNA hybridization and average nucleotide identity values also supported that this microorganism belonged to the species . Distinct phenotypic characteristics between TF06-26 and the type strain of . , such as the fermentation of D-lactose, D-fructose and D-maltose, positive growth under pH 5 and 0.2% (/) cholate, suggested this strain was a novel subspecies. Comparative genome analysis revealed that butyric acid kinase and phosphate butyryltransferase enzymes were coded exclusively by this strain, indicating a specific butyric acid-producing function of this . subspecies within the genus . Thus, subsp. subsp. nov. was proposed, with set strain TF06-26 (=CGMCC 1.5216 = DSM 105138) as the type strain.

摘要

产丁酸细菌可以生物合成丁酸并缓解炎症性疾病。然而,很少有研究报道该属具有产生丁酸的能力。在此,我们的研究描述了一株菌株,它是一种杆状专性厌氧菌,能够产生丁酸。这种微生物是从人类肠道中分离出来的,发现其最佳生长条件是在pH 6.5的PYG培养基上37℃培养。16S rRNA基因序列表明,这种微生物与ATCC 25986的相似度为99.93%,高于区分两个物种的阈值(98.65%)。数字DNA-DNA杂交和平均核苷酸同一性值也支持这种微生物属于该物种。TF06-26与该物种模式菌株之间不同的表型特征,如对D-乳糖、D-果糖和D-麦芽糖的发酵、在pH 5和0.2%(/)胆酸盐条件下的阳性生长,表明该菌株是一个新亚种。比较基因组分析表明,丁酸激酶和磷酸丁酰转移酶仅由该菌株编码,表明该属内这个亚种具有特定的产丁酸功能。因此,提出了新亚种,模式菌株为TF06-26(=CGMCC 1.5216 = DSM 105138)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ded1/6463082/99b55f2e0f37/microorganisms-07-00078-g001.jpg

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