RaNA-Seq：从FASTQ文件到功能分析的交互式RNA测序分析

RaNA-Seq: Interactive RNA-Seq analysis from FASTQ files to functional analysis.

作者信息

Prieto Carlos, Barrios David

机构信息

Bioinformatics Service, Nucleus, University of Salamanca, Plaza Doctores de la Reina, Salamanca, Spain.

出版信息

Bioinformatics. 2019 Nov 15. doi: 10.1093/bioinformatics/btz854.

DOI:10.1093/bioinformatics/btz854

PMID:31730197

Abstract

SUMMARY

RaNA-Seq is a cloud platform for the rapid analysis and visualization of RNA-Seq data. It performs a full analysis in minutes by quantifying FASTQ files, calculating quality control metrics, running differential expression analyses and enabling the explanation of results with functional analyses. Our analysis pipeline applies generally accepted and reproducible protocols that can be applied with two simple steps in its web interface. Analysis results are presented as interactive graphics and reports, ready for their interpretation and publication.

AVAILABILITY

RaNA-Seq web service is freely available online at https://ranaseq.eu.

SUPPLEMENTARY INFORMATION

Supplementary data are available at Bioinformatics online.

摘要

RaNA-Seq是一个用于RNA-Seq数据快速分析和可视化的云平台。它通过对FASTQ文件进行定量、计算质量控制指标、运行差异表达分析以及通过功能分析来解释结果，在几分钟内就能完成全面分析。我们的分析流程采用了普遍接受且可重复的协议，在其网页界面中只需两个简单步骤即可应用。分析结果以交互式图形和报告的形式呈现，随时可供解读和发表。