Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT.
Department of Dermatology, Yale University, New Haven, CT.
Yale J Biol Med. 2020 Mar 27;93(1):3-17. eCollection 2020 Mar.
We previously determined the crystal structure of the wild-type keratin 1/10 helix 2B heterodimer at 3.3 Å resolution. We proposed that the resolution of the diffraction data was limited due to the crystal packing effect from keratin 10 (K10) residue Cys401. Cys401 formed a disulfide-linkage with Cys401 from another K1/10 heterodimer, creating an "X-shaped" structure and a loose crystal packing arrangement. We hypothesized that mutation of Cys401 to alanine would eliminate the disulfide-linkage and improve crystal packing thereby increasing resolution of diffraction and enabling a more accurate side chain electron density map. Indeed, when a K10 Cys401Ala 2B mutant was paired with its native keratin 1 (K1) 2B heterodimer partner its x-ray crystal structure was determined at 2.07 Å resolution; the structure does not contain a disulfide linkage. Superposition of the K1/K10(Cys401Ala) 2B structure onto the wild-type K1/10 2B heterodimer structure had a root-mean-square-deviation of 1.88 Å; the variability in the atomic positions reflects the dynamic motion expected in this filamentous coiled-coil complex. The electrostatic, hydrophobic, and contour features of the molecular surface are similar to the lower resolution wild-type structure. We postulated that elimination of the disulfide linkage in the K1/K10(Cys401Ala) 2B structure could allow for the 2B heterodimers to bind/pack in the A tetramer configuration associated with mature keratin intermediate filament assembly. Analysis of the crystal packing revealed a half-staggered anti-parallel tetrameric complex of 2B heterodimers; however, their register is not consistent with models of the A mode of tetrameric alignment or prior biochemical cross-linking studies.
我们之前已经确定了野生型角蛋白 1/10 螺旋 2B 异二聚体在 3.3Å分辨率下的晶体结构。我们提出,由于角蛋白 10(K10)残基半胱氨酸 401 的晶体包装效应,衍射数据的分辨率受到限制。Cys401 与另一个 K1/10 异二聚体的 Cys401 形成二硫键,形成“X 形”结构和松散的晶体包装排列。我们假设突变 Cys401 为丙氨酸将消除二硫键并改善晶体包装,从而提高衍射分辨率并使更准确的侧链电子密度图成为可能。事实上,当 K10 Cys401Ala 2B 突变体与天然角蛋白 1(K1)2B 异二聚体伴侣配对时,其 x 射线晶体结构在 2.07Å分辨率下确定;该结构不含二硫键。将 K1/K10(Cys401Ala)2B 结构叠加到野生型 K1/10 2B 异二聚体结构上,均方根偏差为 1.88Å;原子位置的可变性反映了该丝状卷曲螺旋复合物中预期的动态运动。分子表面的静电、疏水性和轮廓特征与较低分辨率的野生型结构相似。我们推测,在 K1/K10(Cys401Ala)2B 结构中消除二硫键可以使 2B 异二聚体以与成熟角蛋白中间丝组装相关的 A 四聚体构型结合/包装。晶体包装分析揭示了半交错反平行四聚体 2B 异二聚体复合物;然而,它们的登记与四聚体排列的 A 模式或先前的生化交联研究的模型不一致。