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天然表雌三醇-16作为针对多重耐药鲍曼不动杆菌潜在分子靶点的潜在先导分子——来自计算机模拟和体外研究的见解

Natural epiestriol-16 act as potential lead molecule against prospective molecular targets of multidrug resistant Acinetobacter baumannii-Insight from in silico modelling and in vitro investigations.

作者信息

Skariyachan Sinosh, Muddebihalkar Aditi G, Badrinath Vaishnavi, Umashankar Bindu, Eram Daniya, Uttarkar Akshay, Niranjan Vidya

机构信息

Department of Microbiology, St. Pius X College Rajapuram, Kasaragod, Kerala, India; Department of Biotechnology, Dayananda Sagar College of Engineering, Bangalore, Karnataka, India.

Department of Biotechnology, Dayananda Sagar College of Engineering, Bangalore, Karnataka, India.

出版信息

Infect Genet Evol. 2020 Aug;82:104314. doi: 10.1016/j.meegid.2020.104314. Epub 2020 Apr 5.

Abstract

The current study aimed to identify putative drug targets of multidrug resistant Acinetobacter baumannii (MDRAb) and study the therapeutic potential of natural epiestriol-16 by computer aided virtual screening and in vitro studies. The clinical isolates (n = 5) showed extreme dug resistance to carbapenems and colistins (p ≤ .05). Computational screening suggested that out of 236 natural molecules selected, 06 leads were qualified for drug likeliness, pharmacokinetic features and one potential molecule namely natural epiestriol-16 (16b-Hydroxy-17a-estradiol) exhibited significant binding potential towards four prioritised drug targets in comparison with the binding of faropenem to their usual target. Natural epiestriol demonstrated profound binding to the outer membrane protein (Omp38), protein RecA (RecA), orotate phosphoribosyltransferase (PyrE) and orotidine 5'-phosphate decarboxylase (PyrF) with binding energy of -6.0, -7.3, -7.3 and -8.0 kcal/mol respectively. MD simulations suggested that 16-epiestriol-receptor complexes demonstrated stability throughout the simulation. The growth curve and time kill assays revealed that MDRAb showed resistance to faropenem and polymyxin-B and the pure epiestriol-16 showed significant inhibitory properties at a concentration of 200 μg/mL (p ≤ .5). Thus, natural epiestriol-16 can be used as potential inhibitor against the prioritised targets of MDRAb and this study provide insight for drug development against carbapenem and colistin resistant A. baumannii.

摘要

本研究旨在通过计算机辅助虚拟筛选和体外研究,确定多重耐药鲍曼不动杆菌(MDRAb)的潜在药物靶点,并研究天然表雌三醇-16的治疗潜力。临床分离株(n = 5)对碳青霉烯类和粘菌素表现出极高的耐药性(p≤0.05)。计算筛选表明,在所选的236种天然分子中,有6种先导化合物符合药物相似性、药代动力学特征,其中一种潜在分子即天然表雌三醇-16(16β-羟基-17α-雌二醇)与法罗培南与其常用靶点的结合相比,对四个优先药物靶点表现出显著的结合潜力。天然表雌三醇与外膜蛋白(Omp38)、蛋白RecA(RecA)、乳清酸磷酸核糖转移酶(PyrE)和乳清苷5'-磷酸脱羧酶(PyrF)表现出深度结合,结合能分别为-6.0、-7.3、-7.3和-8.0 kcal/mol。分子动力学模拟表明,16-表雌三醇-受体复合物在整个模拟过程中表现出稳定性。生长曲线和时间杀菌试验表明,MDRAb对法罗培南和多粘菌素B耐药,而纯表雌三醇-16在200μg/mL浓度下表现出显著的抑制特性(p≤0.5)。因此,天然表雌三醇-16可作为针对MDRAb优先靶点的潜在抑制剂,本研究为开发针对碳青霉烯类和粘菌素耐药鲍曼不动杆菌的药物提供了思路。

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