An integrated national scale SARS-CoV-2 genomic surveillance network.
出版信息
Lancet Microbe. 2020 Jul;1(3):e99-e100. doi: 10.1016/S2666-5247(20)30054-9. Epub 2020 Jun 2.
Abstract
摘要
相似文献
1
An integrated national scale SARS-CoV-2 genomic surveillance network.
Lancet Microbe. 2020 Jul;1(3):e99-e100. doi: 10.1016/S2666-5247(20)30054-9. Epub 2020 Jun 2.
2
CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance.
Genome Biol. 2021 Jul 1;22(1):196. doi: 10.1186/s13059-021-02395-y.
3
Alarming COVID variants show vital role of genomic surveillance.
Nature. 2021 Jan;589(7842):337-338. doi: 10.1038/d41586-021-00065-4.
4
Global genomic diversity and conservation of SARS-CoV-2 since the COVID-19 outbreak.
Microbiol Spectr. 2023 Dec 12;11(6):e0282623. doi: 10.1128/spectrum.02826-23. Epub 2023 Nov 1.
5
Global disparities in SARS-CoV-2 genomic surveillance.
Nat Commun. 2022 Nov 16;13(1):7003. doi: 10.1038/s41467-022-33713-y.
6
SARS-CoV-2 AY.4.2 variant circulating in Italy: Genomic preliminary insight.
J Med Virol. 2022 Apr;94(4):1689-1692. doi: 10.1002/jmv.27451. Epub 2021 Nov 17.
7
Tracking the prevalence and emergence of SARS-CoV-2 variants of concern using a regional genomic surveillance program.
Microbiol Spectr. 2024 Aug 6;12(8):e0422523. doi: 10.1128/spectrum.04225-23. Epub 2024 Jun 24.
8
Tracking down B.1.351 SARS-CoV-2 variant in Pakistan through genomic surveillance.
J Med Virol. 2022 Jan;94(1):32-34. doi: 10.1002/jmv.27328. Epub 2021 Sep 15.
9
Advancing Precision Vaccinology by Molecular and Genomic Surveillance of Severe Acute Respiratory Syndrome Coronavirus 2 in Germany, 2021.
Clin Infect Dis. 2022 Aug 15;75(Suppl 1):S110-S120. doi: 10.1093/cid/ciac399.
10
Genomic surveillance of SARS-CoV-2 in Thailand reveals mixed imported populations, a local lineage expansion and a virus with truncated ORF7a.
Virus Res. 2021 Jan 15;292:198233. doi: 10.1016/j.virusres.2020.198233. Epub 2020 Nov 21.
引用本文的文献
1
Monitoring SARS-CoV-2 Dissemination in Wastewater and Virus Isolation in Cell Cultures: An Integrated Approach for Pathogen Detection and Surveillance.
J Cell Mol Med. 2025 Sep;29(17):e70805. doi: 10.1111/jcmm.70805.
2
SARS-CoV-2 genomic surveillance using rapid point of care COVID-19 antigen tests at public test sites in California.
Front Public Health. 2025 Jul 25;13:1620651. doi: 10.3389/fpubh.2025.1620651. eCollection 2025.
3
Penetration of SARS-CoV-2 Alpha, Delta, and Omicron variants in the United States.
Epidemiol Infect. 2025 Aug 4;153:e92. doi: 10.1017/S0950268825100290.
4
Genomic epidemiology of SARS-CoV-2 in Norfolk, UK, March 2020-December 2022.
Microb Genom. 2025 Jul;11(7). doi: 10.1099/mgen.0.001435.
5
The Case for Genomic Surveillance in Africa.
Trop Med Infect Dis. 2025 May 8;10(5):129. doi: 10.3390/tropicalmed10050129.
6
Insights into the implementation of a whole genome sequencing report form (SRF) to reduce nosocomial SARS-CoV-2 in UK hospitals within an unfolding pandemic: A qualitative process evaluation using normalisation process theory.
PLoS One. 2025 Apr 17;20(4):e0321534. doi: 10.1371/journal.pone.0321534. eCollection 2025.
7
Use of integrated genomic surveillance by local public health authorities: Recommendations based on a mixed-methods study of current adoption, applications and success factors, Germany, 2023.
Euro Surveill. 2025 Apr;30(13). doi: 10.2807/1560-7917.ES.2025.30.13.2400508.
8
Temporal dynamics of SARS-CoV-2 shedding in feces and saliva: a longitudinal study in Norfolk, United Kingdom during the 2021-2022 COVID-19 waves.
Microbiol Spectr. 2025 Mar 25;13(5):e0319524. doi: 10.1128/spectrum.03195-24.
9
Leveraging mobility data to analyze persistent SARS-CoV-2 mutations and inform targeted genomic surveillance.
Elife. 2025 Jan 15;13:RP94045. doi: 10.7554/eLife.94045.
10
Advancements in Structural Basis of Covalent Inhibitors Targeting SARS-CoV-2 Essential Proteins.
Curr Med Chem. 2025;32(19):3790-3824. doi: 10.2174/0109298673323348241208080419.
本文引用的文献
1
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology.
Nat Microbiol. 2020 Nov;5(11):1403-1407. doi: 10.1038/s41564-020-0770-5. Epub 2020 Jul 15.
2
Use of Whole-Genome Sequencing in the Investigation of a Nosocomial Influenza Virus Outbreak.
J Infect Dis. 2018 Sep 22;218(9):1485-1489. doi: 10.1093/infdis/jiy335.
3
CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community.
Microb Genom. 2016 Sep 20;2(9):e000086. doi: 10.1099/mgen.0.000086. eCollection 2016 Sep.
4
Microreact: visualizing and sharing data for genomic epidemiology and phylogeography.
Microb Genom. 2016 Nov 30;2(11):e000093. doi: 10.1099/mgen.0.000093. eCollection 2016 Nov.
5
Evolutionary dynamics of local pandemic H1N1/2009 influenza virus lineages revealed by whole-genome analysis.
J Virol. 2012 Jan;86(1):11-8. doi: 10.1128/JVI.05347-11. Epub 2011 Oct 19.
6
Phylodynamics of infectious disease epidemics.
Genetics. 2009 Dec;183(4):1421-30. doi: 10.1534/genetics.109.106021. Epub 2009 Sep 21.
7
Pandemic potential of a strain of influenza A (H1N1): early findings.
Science. 2009 Jun 19;324(5934):1557-61. doi: 10.1126/science.1176062. Epub 2009 May 11.
Zotero 插件