aCLImatise：生物信息学工作流程工具定义的自动生成
aCLImatise: automated generation of tool definitions for bioinformatics workflows.
作者信息
Milton Michael, Thorne Natalie
机构信息
Melbourne Genomics Health Alliance, Parkville, VIC 3052, Australia.
Walter and Eliza Hall Institute of Medical Research, Parkville, VIC 3052, Australia.
出版信息
Bioinformatics. 2021 Apr 1;36(22-23):5556-5557. doi: 10.1093/bioinformatics/btaa1033.
SUMMARY
aCLImatise is a utility for automatically generating tool definitions compatible with bioinformatics workflow languages, by parsing command-line help output. aCLImatise also has an associated database called the aCLImatise Base Camp, which provides thousands of pre-computed tool definitions.
AVAILABILITY AND IMPLEMENTATION
The latest aCLImatise source code is available within a GitHub organisation, under the GPL-3.0 license: https://github.com/aCLImatise. In particular, documentation for the aCLImatise Python package is available at https://aclimatise.github.io/CliHelpParser/, and the aCLImatise Base Camp is available at https://aclimatise.github.io/BaseCamp/.
SUPPLEMENTARY INFORMATION
Supplementary data are available at Bioinformatics online.
摘要
aCLImatise是一种实用工具，可通过解析命令行帮助输出自动生成与生物信息学工作流语言兼容的工具定义。aCLImatise还有一个名为aCLImatise Base Camp的关联数据库，它提供了数千个预先计算好的工具定义。
可用性与实现方式
最新的aCLImatise源代码可在GitHub组织内获取，遵循GPL - 3.0许可：https://github.com/aCLImatise。特别是，aCLImatise Python包的文档可在https://aclimatise.github.io/CliHelpParser/获取，aCLImatise Base Camp可在https://aclimatise.github.io/BaseCamp/获取。
补充信息
补充数据可在《生物信息学》在线版获取。
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