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利用红斑阿波罗蝴蝶转录组来鉴定抗……的抗菌肽候选物

Utilizing Red Spotted Apollo Butterfly Transcriptome to Identify Antimicrobial Peptide Candidates against .

作者信息

Lee Kang-Woon, Kim Jae-Goo, Veerappan Karpagam, Chung Hoyong, Natarajan Sathishkumar, Kim Ki-Young, Park Junhyung

机构信息

Holoce Ecosystem Conservation Research Institute (HECRI), Hweongsung 25257, Gangwon-do, Korea.

Graduate School of Biotechnology, Kyung Hee University, Yongin-si 17104, Gyeonggi-do, Korea.

出版信息

Insects. 2021 May 18;12(5):466. doi: 10.3390/insects12050466.

Abstract

Classical antibiotics are the foremost treatment strategy against microbial infections. Overuse of this has led to the evolution of antimicrobial resistance. Antimicrobial peptides (AMPs) are natural defense elements present across many species including humans, insects, bacteria, and plants. Insect AMPs are our area of interest, because of their stronger abilities in host defense. We have deciphered AMPs from an endangered species , commonly known as the red spotted apollo butterfly. It belongs to the second largest insect order Lepidoptera, comprised of butterflies and moths, and lives in the high altitudes of Russia, China, and Korea. We aimed at identifying the AMPs from the larvae stages. The rationale of choosing this stage is that the larvae development occurs at extremely low temperature conditions, which might serve as external stimuli for AMP production. RNA was isolated from larvae (L1 to L5) instar stages and subjected to next generation sequencing. The transcriptomes obtained were curated in in-silico pipelines. The peptides obtained were screened for requisite AMP physicochemical properties and in vitro antimicrobial activity. With the sequential screening and validation, we obtained fifteen candidate AMPs. One peptide TPS-032 showed promising antimicrobial activity against , a primary causative organism of periodontitis.

摘要

经典抗生素是对抗微生物感染的首要治疗策略。其过度使用已导致抗菌抗性的演变。抗菌肽(AMPs)是存在于包括人类、昆虫、细菌和植物在内的许多物种中的天然防御成分。昆虫抗菌肽是我们感兴趣的领域,因为它们在宿主防御方面具有更强的能力。我们已经从一种濒危物种中破译了抗菌肽,这种物种通常被称为红斑阿波罗蝴蝶。它属于第二大昆虫目鳞翅目,由蝴蝶和蛾子组成,生活在俄罗斯、中国和韩国的高海拔地区。我们旨在从幼虫阶段鉴定抗菌肽。选择这个阶段的理由是幼虫发育发生在极低温度条件下,这可能作为抗菌肽产生的外部刺激。从幼虫(L1至L5)龄期阶段分离RNA,并进行下一代测序。获得的转录组在计算机流程中进行整理。对获得的肽进行必要的抗菌肽物理化学性质和体外抗菌活性筛选。通过连续筛选和验证,我们获得了15种候选抗菌肽。一种名为TPS - 032的肽对牙周炎的主要致病菌显示出有前景的抗菌活性。

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