Suppr超能文献

日本蛋白质数据库:在全球大流行期间庆祝成立 20 周年,作为亚洲的三维大分子结构数据中心。

Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data.

机构信息

Institute for Protein Research, Osaka University, Suita, Osaka, Japan.

School of Advanced Science and Engineering, Waseda University, Shinjuku, Tokyo, Japan.

出版信息

Protein Sci. 2022 Jan;31(1):173-186. doi: 10.1002/pro.4211. Epub 2021 Oct 27.

Abstract

Protein Data Bank Japan (PDBj), a founding member of the worldwide Protein Data Bank (wwPDB) has accepted, processed and distributed experimentally determined biological macromolecular structures for 20 years. During that time, we have continuously made major improvements to our query search interface of PDBj Mine 2, the BMRBj web interface, and EM Navigator for PDB/BMRB/EMDB entries. PDBj also serves PDB-related secondary database data, original web-based modeling services such as Homology modeling of complex structure (HOMCOS), visualization services and utility tools, which we have continuously enhanced and expanded throughout the years. In addition, we have recently developed several unique archives, BSM-Arc for computational structure models, and XRDa for raw X-ray diffraction images, both of which promote open science in the structural biology community. During the COVID-19 pandemic, PDBj has also started to provide feature pages for COVID-19 related entries across all available archives at PDBj from raw experimental data and PDB structural data to computationally predicted models, while also providing COVID-19 outreach content for high school students and teachers.

摘要

日本蛋白质数据库 (PDBj) 是全球蛋白质数据库 (wwPDB) 的创始成员之一,自成立以来已经有 20 年的时间,负责接收、处理和分发经过实验确定的生物大分子结构。在此期间,我们不断对 PDBj Mine 2 查询搜索界面、BMRBj 网络界面和 PDB/BMRB/EMDB 条目的 EM 导航进行重大改进。PDBj 还提供与 PDB 相关的二级数据库数据、原始的基于网络的建模服务,如复杂结构同源建模 (HOMCOS),可视化服务和实用工具,多年来我们一直在不断增强和扩展这些服务。此外,我们最近还开发了几个独特的档案库,包括用于计算结构模型的 BSM-Arc 和用于原始 X 射线衍射图像的 XRDa,这两个档案库都促进了结构生物学领域的开放科学。在 COVID-19 大流行期间,PDBj 还开始在 PDBj 上的所有可用档案库中提供与 COVID-19 相关条目的专题页面,涵盖了从原始实验数据到 PDB 结构数据再到计算预测模型的所有内容,同时还为高中生和教师提供 COVID-19 相关的拓展内容。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/19cc/8740847/f0e4b91c95d1/PRO-31-173-g003.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验