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TILDA:Tat/Rev 诱导的限制稀释分析。

TILDA: Tat/Rev Induced Limiting Dilution Assay.

机构信息

Department of Viroscience, Erasmus University Medical Center, Rotterdam, Netherlands.

Department of Immunology and Allergy, Lausanne University Hospital, Lausanne, Switzerland.

出版信息

Methods Mol Biol. 2022;2407:365-372. doi: 10.1007/978-1-0716-1871-4_24.

Abstract

Recently the Tat/rev Induced Limiting Dilution Assay, or TILDA, has been proposed as a possible alternative method to quantify the HIV-1 reservoir. TILDA estimates the frequency of latently infected cells by probing, in a limiting dilution format, the presence or inducibility of tat and rev multiply spliced HIV-1 RNA. In doing so, TILDA reduces overestimation of reservoir size compared to HIV-1 DNA measurements because multiply spliced HIV-1 RNA is less likely to be transcribed from dysfunctional genomes with replication defects. TILDA is easy to perform, requires a very low input number of cells and has a fast turnaround time, making it ideal for use in clinical settings. Here we describe the execution of TILDA with particular emphasis on cell preparation and the limiting dilution scheme.

摘要

最近,Tat/rev 诱导的限制稀释分析(TILDA)已被提议作为一种可能的替代方法来定量 HIV-1 储存库。TILDA 通过在限制稀释格式中探测 tat 和 rev 多重拼接的 HIV-1 RNA 的存在或诱导性来估计潜伏感染细胞的频率。通过这种方式,与 HIV-1 DNA 测量相比,TILDA 减少了对储存库大小的高估,因为具有复制缺陷的功能失调基因组不太可能从多重拼接的 HIV-1 RNA 转录。TILDA 易于执行,仅需要非常少量的细胞输入,并且周转时间快,非常适合在临床环境中使用。在这里,我们描述了 TILDA 的执行情况,特别强调了细胞准备和限制稀释方案。

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