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基因组分析一种新型生物表面活性剂来源:南极细菌 Psychrobacter sp. TAE2020。

Genome analysis of a new biosurfactants source: The Antarctic bacterium Psychrobacter sp. TAE2020.

机构信息

Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, Italy.

Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario Monte S. Angelo, via Cinthìa, 80125 Naples, Italy.

出版信息

Mar Genomics. 2022 Feb;61:100922. doi: 10.1016/j.margen.2021.100922. Epub 2022 Jan 3.

Abstract

Biosurfactants are considered a possible green alternative to chemical surfactants for countless commercial products including detergents and cleaners, personal care products, cosmetics, pharmaceuticals and therapeutics, food additives, emulsifiers, and dispersants for bioremediation. Organisms from extreme environments are well-adapted to the harsh conditions and represent an exciting avenue of discovery of naturally occurring biosurfactants. In this study, we report the genome analysis of Psychrobacter sp. TAE2020, an aerobic ƴ-proteobacterium isolated from an Antarctic coastal seawater sample collected in the vicinity of the French Antarctic station Dumont d'Urville, Terre Adelie (66°40' S; 140° 01' E) which has been shown to produce biosurfactants. Biochemical assays indicate that Psychrobacter sp. TAE2020 can produce one or more excellent emulsifiers and a biosurfactant which is able to reduce the surface tension of a Gut medium. Next generation sequencing and genome mining allowed the identification of a plethora of biosynthetic gene clusters possibly involved in the production of emulsifying agents, just waiting to be isolated and characterized. This study paves the way for a more thorough investigation into the potential biotechnological applications of this new Antarctic strain.

摘要

生物表面活性剂被认为是一种可能的绿色替代品,可以替代无数商业产品中的化学表面活性剂,包括洗涤剂和清洁剂、个人护理产品、化妆品、制药和治疗、食品添加剂、生物修复用乳化剂和分散剂。来自极端环境的生物对恶劣条件具有很好的适应性,是发现天然生物表面活性剂的令人兴奋的途径。在这项研究中,我们报告了从法国南极站 Dumont d'Urville 附近的南极沿海水样中分离出的好氧γ-变形菌 Psychrobacter sp. TAE2020 的基因组分析,该菌已被证明能产生生物表面活性剂。生化分析表明,Psychrobacter sp. TAE2020 可以产生一种或多种优良的乳化剂和一种能够降低 Gut 培养基表面张力的生物表面活性剂。下一代测序和基因组挖掘鉴定了大量可能参与乳化剂生产的生物合成基因簇,这些基因簇有待进一步分离和表征。这项研究为更深入地研究这种新的南极菌株的潜在生物技术应用铺平了道路。

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