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基于 Hirshfeld 分割的独立梯度模型:化学体系相互作用的可视化研究新方法。

Independent gradient model based on Hirshfeld partition: A new method for visual study of interactions in chemical systems.

机构信息

Beijing Kein Research Center for Natural Sciences, Beijing, China.

出版信息

J Comput Chem. 2022 Mar 30;43(8):539-555. doi: 10.1002/jcc.26812. Epub 2022 Feb 2.

Abstract

The powerful independent gradient model (IGM) method has been increasingly popular in visual analysis of intramolecular and intermolecular interactions in recent years. However, we frequently observed that there is an evident shortcoming of IGM map in graphically studying weak interactions, that is its isosurfaces are usually too bulgy; in these cases, not only the graphical effect is poor, but also the color on some areas on the isosurfaces is inappropriate and may lead to erroneous analysis conclusions. In addition, the IGM method was originally proposed based on promolecular density, which is quite crude and does not take actual electronic structure into account. In this article, we propose an improvement version of IGM, namely IGM based on Hirshfeld partition of molecular density (IGMH), which replaces the free-state atomic densities involved in the IGM method with the atomic densities derived by Hirshfeld partition of actual molecular electron density. This change makes IGM have more rigorous physical background. A large number of application examples in this article, including molecular and periodic systems, weak and chemical bond interactions, fully demonstrate the important value of IGMH in intuitively understanding interactions in chemical systems. Comparisons also showed that the IGMH usually has markedly better graphical effect than IGM and overcomes known problems in IGM. Currently IGMH analysis has been supported in our wavefunction analysis code Multiwfn (http://sobereva.com/multiwfn). We hope that IGMH will become a new useful method among chemists for exploring interactions in wide variety of chemical systems.

摘要

近年来,强大的独立梯度模型(IGM)方法在分子内和分子间相互作用的可视化分析中越来越受欢迎。然而,我们经常观察到 IGM 图谱在研究弱相互作用时有一个明显的缺点,即它的等位面通常过于突出;在这些情况下,不仅图形效果较差,而且等位面某些区域的颜色也不合适,可能导致错误的分析结论。此外,IGM 方法最初是基于前分子密度提出的,这相当粗糙,不考虑实际的电子结构。在本文中,我们提出了 IGM 的改进版本,即基于分子密度 Hirshfeld 分区的 IGM(IGMH),它用实际分子电子密度的 Hirshfeld 分区得到的原子密度代替了 IGM 方法中涉及的自由态原子密度。这种变化使 IGM 具有更严格的物理背景。本文中的大量应用实例,包括分子和周期体系、弱相互作用和化学键相互作用,充分证明了 IGMH 在直观理解化学体系相互作用方面的重要价值。比较还表明,IGMH 通常具有明显优于 IGM 的图形效果,并克服了 IGM 中的已知问题。目前,我们的波函数分析代码 Multiwfn(http://sobereva.com/multiwfn)已经支持 IGMH 分析。我们希望 IGMH 将成为化学家探索各种化学体系相互作用的一种新的有用方法。

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