Suppr超能文献

走钢丝:R 环在基因组稳定性中的复杂平衡作用。

Walking a tightrope: The complex balancing act of R-loops in genome stability.

机构信息

Department of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.

Department of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.

出版信息

Mol Cell. 2022 Jun 16;82(12):2267-2297. doi: 10.1016/j.molcel.2022.04.014. Epub 2022 May 3.

Abstract

Although transcription is an essential cellular process, it is paradoxically also a well-recognized cause of genomic instability. R-loops, non-B DNA structures formed when nascent RNA hybridizes to DNA to displace the non-template strand as single-stranded DNA (ssDNA), are partially responsible for this instability. Yet, recent work has begun to elucidate regulatory roles for R-loops in maintaining the genome. In this review, we discuss the cellular contexts in which R-loops contribute to genomic instability, particularly during DNA replication and double-strand break (DSB) repair. We also summarize the evidence that R-loops participate as an intermediate during repair and may influence pathway choice to preserve genomic integrity. Finally, we discuss the immunogenic potential of R-loops and highlight their links to disease should they become pathogenic.

摘要

虽然转录是一个重要的细胞过程,但它也是基因组不稳定性的公认原因。当新生 RNA 与 DNA 杂交以取代非模板链作为单链 DNA(ssDNA)时,形成的非 B 型 DNA 结构 R 环部分导致了这种不稳定性。然而,最近的工作已经开始阐明 R 环在维持基因组方面的调节作用。在这篇综述中,我们讨论了 R 环导致基因组不稳定性的细胞环境,特别是在 DNA 复制和双链断裂(DSB)修复期间。我们还总结了 R 环作为修复过程中的中间产物参与的证据,并且可能影响路径选择以维持基因组完整性。最后,我们讨论了 R 环的免疫原性潜力,并强调了它们与疾病的联系,如果它们成为致病性的话。

相似文献

1
Walking a tightrope: The complex balancing act of R-loops in genome stability.
Mol Cell. 2022 Jun 16;82(12):2267-2297. doi: 10.1016/j.molcel.2022.04.014. Epub 2022 May 3.
2
R-loops as Janus-faced modulators of DNA repair.
Nat Cell Biol. 2021 Apr;23(4):305-313. doi: 10.1038/s41556-021-00663-4. Epub 2021 Apr 9.
3
The balancing act of R-loop biology: The good, the bad, and the ugly.
J Biol Chem. 2020 Jan 24;295(4):905-913. doi: 10.1074/jbc.REV119.011353. Epub 2019 Dec 16.
4
R-Loop Physiology and Pathology: A Brief Review.
DNA Cell Biol. 2020 Nov;39(11):1914-1925. doi: 10.1089/dna.2020.5906. Epub 2020 Oct 14.
5
Regulatory R-loops as facilitators of gene expression and genome stability.
Nat Rev Mol Cell Biol. 2020 Mar;21(3):167-178. doi: 10.1038/s41580-019-0206-3. Epub 2020 Jan 31.
6
Toxic R-loops: Cause or consequence of replication stress?
DNA Repair (Amst). 2021 Nov;107:103199. doi: 10.1016/j.dnarep.2021.103199. Epub 2021 Aug 3.
7
Clinical and Mechanistic Implications of R-Loops in Human Leukemias.
Int J Mol Sci. 2023 Mar 22;24(6):5966. doi: 10.3390/ijms24065966.
8
Replisome bypass of transcription complexes and R-loops.
Nucleic Acids Res. 2020 Oct 9;48(18):10353-10367. doi: 10.1093/nar/gkaa741.
9
RAP80 suppresses the vulnerability of R-loops during DNA double-strand break repair.
Cell Rep. 2022 Feb 1;38(5):110335. doi: 10.1016/j.celrep.2022.110335.
10
Sources, resolution and physiological relevance of R-loops and RNA-DNA hybrids.
Nat Rev Mol Cell Biol. 2022 Aug;23(8):521-540. doi: 10.1038/s41580-022-00474-x. Epub 2022 Apr 22.

引用本文的文献

1
Aquarius helicase facilitates HIV-1 integration into R-loop enriched genomic regions.
Nat Microbiol. 2025 Aug 20. doi: 10.1038/s41564-025-02089-2.
2
Prognostic Significance of R-Loops in Lung Adenocarcinoma: Implications for Immune Response and Drug Sensitivity.
Cancer Manag Res. 2025 Aug 12;17:1625-1642. doi: 10.2147/CMAR.S533571. eCollection 2025.
3
The DNA damage response pathway is required for multiciliated cell differentiation.
bioRxiv. 2025 Jul 14:2025.07.13.664567. doi: 10.1101/2025.07.13.664567.
5
AND-1 is a critical regulator of R-loop dynamics and a target to overcome endocrine resistance.
Sci Adv. 2025 Aug 8;11(32):eadv2453. doi: 10.1126/sciadv.adv2453.
6
Small molecule inhibition of CPSF3 impacts R-loop distribution and abundance.
bioRxiv. 2025 May 7:2025.05.07.652284. doi: 10.1101/2025.05.07.652284.
7
Structural insights into transcriptional regulation by the helicase RECQL5.
Nat Struct Mol Biol. 2025 Jul 7. doi: 10.1038/s41594-025-01611-8.
8
Cellular imbalance of specific RNA-binding proteins associates with harmful R-loops.
PLoS Genet. 2025 Jul 2;21(7):e1011491. doi: 10.1371/journal.pgen.1011491. eCollection 2025 Jul.
9
The PARP1-EXD2 axis orchestrates R-loop resolution to safeguard genome stability.
Nat Chem Biol. 2025 Jun 27. doi: 10.1038/s41589-025-01952-x.

本文引用的文献

1
DNA damage contributes to neurotoxic inflammation in Aicardi-Goutières syndrome astrocytes.
J Exp Med. 2022 Apr 4;219(4). doi: 10.1084/jem.20211121. Epub 2022 Mar 9.
5
Proximity labeling identifies a repertoire of site-specific R-loop modulators.
Nat Commun. 2022 Jan 10;13(1):53. doi: 10.1038/s41467-021-27722-6.
6
MYCN recruits the nuclear exosome complex to RNA polymerase II to prevent transcription-replication conflicts.
Mol Cell. 2022 Jan 6;82(1):159-176.e12. doi: 10.1016/j.molcel.2021.11.002. Epub 2021 Nov 29.
7
The role of chromatin at transcription-replication conflicts as a genome safeguard.
Biochem Soc Trans. 2021 Dec 17;49(6):2727-2736. doi: 10.1042/BST20210691.
8
9
An Aicardi-Goutières Syndrome-Causative Point Mutation in Gene Invokes Multiorgan Inflammation and Late-Onset Encephalopathy in Mice.
J Immunol. 2021 Dec 15;207(12):3016-3027. doi: 10.4049/jimmunol.2100526. Epub 2021 Nov 12.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验