Division of Molecular Medicine, Department of Anesthesiology and Perioperative Medicine, David Geffen School of Medicine, University of California, Los Angeles.
Circulation. 2022 Oct 18;146(16):1243-1258. doi: 10.1161/CIRCULATIONAHA.122.059591. Epub 2022 Aug 22.
RNA-binding proteins are master orchestrators of gene expression regulation. They regulate hundreds of transcripts at once by recognizing specific motifs. Thus, characterizing RNA-binding proteins targets is critical to harvest their full therapeutic potential. However, such investigation has often been restricted to a few RNA-binding protein targets, limiting our understanding of their function. In cancer, the RNA-binding protein HNRNPA2B1 (heterogeneous nuclear ribonucleoprotein A2B1; A2B1) promotes the pro-proliferative/anti-apoptotic phenotype. The same phenotype in pulmonary arterial smooth muscle cells (PASMCs) is responsible for the development of pulmonary arterial hypertension (PAH). However, A2B1 function has never been investigated in PAH.
Through the integration of computational and experimental biology, the authors investigated the role of A2B1 in human PAH-PASMC. Bioinformatics and RNA sequencing allowed them to investigate the transcriptome-wide function of A2B1, and RNA immunoprecipitation and A2B1 silencing experiments allowed them to decipher the intricate molecular mechanism at play. In addition, they performed a preclinical trial in the monocrotaline-induced pulmonary hypertension rat model to investigate the relevance of A2B1 inhibition in mitigating pulmonary hypertension severity.
They found that A2B1 expression and its nuclear localization are increased in human PAH-PASMC. Using bioinformatics, they identified 3 known motifs of A2B1 and all mRNAs carrying them. In PAH-PASMC, they demonstrated the complementary nonredundant function of A2B1 motifs because all motifs are implicated in different aspects of the cell cycle. In addition, they showed that in PAH-PASMC, A2B1 promotes the expression of its targets. A2B1 silencing in PAH-PASMC led to a decrease of all tested mRNAs carrying an A2B1 motif and a concomitant decrease in proliferation and resistance to apoptosis. Last, in vivo A2B1 inhibition in the lungs rescued pulmonary hypertension in rats.
Through the integration of computational and experimental biology, the study revealed the role of A2B1 as a master orchestrator of the PAH-PASMC phenotype and its relevance as a therapeutic target in PAH.
RNA 结合蛋白是基因表达调控的主要协调者。它们通过识别特定的模体一次调节数百个转录本。因此,鉴定 RNA 结合蛋白靶标对于充分发挥其治疗潜力至关重要。然而,这种研究通常仅限于少数几个 RNA 结合蛋白靶标,限制了我们对其功能的理解。在癌症中,RNA 结合蛋白 HNRNPA2B1(异质核核糖核蛋白 A2B1;A2B1)促进了促增殖/抗凋亡表型。肺动脉平滑肌细胞(PASMC)中的相同表型负责肺动脉高压(PAH)的发展。然而,A2B1 的功能从未在 PAH 中进行过研究。
通过计算生物学和实验生物学的整合,作者研究了 A2B1 在人 PAH-PASMC 中的作用。生物信息学和 RNA 测序使他们能够研究 A2B1 的全转录组功能,而 RNA 免疫沉淀和 A2B1 沉默实验使他们能够揭示发挥作用的复杂分子机制。此外,他们在野百合碱诱导的肺动脉高压大鼠模型中进行了一项临床前试验,以研究 A2B1 抑制在减轻肺动脉高压严重程度方面的相关性。
他们发现 A2B1 的表达及其核定位在人 PAH-PASMC 中增加。通过生物信息学,他们鉴定出 A2B1 的 3 个已知模体和所有带有这些模体的 mRNA。在 PAH-PASMC 中,他们证明了 A2B1 模体的互补非冗余功能,因为所有模体都涉及细胞周期的不同方面。此外,他们表明,在 PAH-PASMC 中,A2B1 促进其靶标的表达。在 PAH-PASMC 中沉默 A2B1 导致所有测试的带有 A2B1 模体的 mRNA 减少,同时增殖减少且对凋亡的抵抗力降低。最后,体内 A2B1 抑制在肺部挽救了大鼠的肺动脉高压。
通过计算生物学和实验生物学的整合,该研究揭示了 A2B1 作为 PAH-PASMC 表型的主要协调者的作用及其作为 PAH 治疗靶点的相关性。