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基于铜死亡相关长链非编码RNA的预后特征可预测结直肠癌患者的预后及化疗敏感性。

A prognostic signature based on cuprotosis-related long non-coding RNAs predicts the prognosis and sensitivity to chemotherapy in patients with colorectal cancer.

作者信息

Li Wei, Yang Guiyun, Dong Hao, Zhu Jiajing, Liu Tongjun

机构信息

Department of Colorectal and Anal Surgery, The Second Hospital of Jilin University, Changchun, China.

Department of Operating Room, The Second Hospital of Jilin University, Changchun, China.

出版信息

Front Med (Lausanne). 2022 Nov 16;9:1055785. doi: 10.3389/fmed.2022.1055785. eCollection 2022.

Abstract

Cuprotosis, a newly proposed mechanism of cell death, can trigger acute oxidative stress that leads to cell death by mediating protein lipidation in the tricarboxylic acid cycle. However, cuprotosis-related long non-coding RNAs (CRLNCs) and their relationship with prognosis and the immunological landscape of colorectal cancer (CRC) are unclear. We have developed a lncRNA signature to predict survival time, immune infiltration, and sensitivity to chemotherapy. CRLNCs were screened using the Cor function of the R software and the differentially expressed lncRNAs were collected with the limma package. Differentially expressed long non-coding RNAs (lncRNAs) associated with prognosis were selected using univariate regression analysis. A prognostic signature was developed using the least absolute shrinkage and selection operator (LASSO) and multivariate regression analysis. Patients with CRC were divided into two groups based on the risk score. The low-risk group had a more favorable prognosis, higher expression of immune checkpoints, and a higher level of immune cell infiltration compared with the high-risk group. Furthermore, there was a close association between the risk score and the clinical stage, tumor mutational burden, cancer stem cell index, and microsatellite instability. We also assessed chemotherapy response in the two risk groups. Our study analyzed the role of CRLNCs in CRC and provided novel targets and strategies for CRC chemotherapy and immunotherapy.

摘要

铜死亡是一种新提出的细胞死亡机制,可引发急性氧化应激,通过介导三羧酸循环中的蛋白质脂化作用导致细胞死亡。然而,与铜死亡相关的长链非编码RNA(CRLNCs)及其与结直肠癌(CRC)预后和免疫格局的关系尚不清楚。我们开发了一种lncRNA特征来预测生存时间、免疫浸润和化疗敏感性。使用R软件的Cor函数筛选CRLNCs,并使用limma软件包收集差异表达的lncRNAs。使用单变量回归分析选择与预后相关的差异表达长链非编码RNA(lncRNAs)。使用最小绝对收缩和选择算子(LASSO)和多变量回归分析建立预后特征。根据风险评分将CRC患者分为两组。与高风险组相比,低风险组预后更有利,免疫检查点表达更高,免疫细胞浸润水平更高。此外,风险评分与临床分期、肿瘤突变负担、癌症干细胞指数和微卫星不稳定性之间存在密切关联。我们还评估了两个风险组的化疗反应。我们的研究分析了CRLNCs在CRC中的作用,并为CRC化疗和免疫治疗提供了新的靶点和策略。

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