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Pharos 2023:一个针对人类蛋白质组中未被充分研究的部分的综合资源。

Pharos 2023: an integrated resource for the understudied human proteome.

机构信息

National Center for Advancing Translational Science, 9800 Medical Center Drive, Rockville, MD 20850, USA.

Translational Informatics Division, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, NM 87131, USA.

出版信息

Nucleic Acids Res. 2023 Jan 6;51(D1):D1405-D1416. doi: 10.1093/nar/gkac1033.

Abstract

The Illuminating the Druggable Genome (IDG) project aims to improve our understanding of understudied proteins and our ability to study them in the context of disease biology by perturbing them with small molecules, biologics, or other therapeutic modalities. Two main products from the IDG effort are the Target Central Resource Database (TCRD) (http://juniper.health.unm.edu/tcrd/), which curates and aggregates information, and Pharos (https://pharos.nih.gov/), a web interface for fusers to extract and visualize data from TCRD. Since the 2021 release, TCRD/Pharos has focused on developing visualization and analysis tools that help reveal higher-level patterns in the underlying data. The current iterations of TCRD and Pharos enable users to perform enrichment calculations based on subsets of targets, diseases, or ligands and to create interactive heat maps and UpSet charts of many types of annotations. Using several examples, we show how to address disease biology and drug discovery questions through enrichment calculations and UpSet charts.

摘要

Illuminating the Druggable Genome(IDG)项目旨在通过小分子、生物制剂或其他治疗方式来干扰这些未被充分研究的蛋白质,从而增进我们对它们的了解,并提高我们在疾病生物学背景下研究它们的能力。IDG 工作的两个主要成果是 Target Central Resource Database(TCRD)(http://juniper.health.unm.edu/tcrd/),它对信息进行编目和聚合,以及 Pharos(https://pharos.nih.gov/),这是一个供 fusers 从 TCRD 中提取和可视化数据的网络界面。自 2021 年发布以来,TCRD/Pharos 一直专注于开发可视化和分析工具,以帮助揭示底层数据中的更高层次模式。目前的 TCRD 和 Pharos 版本允许用户根据目标、疾病或配体的子集进行富集计算,并创建许多类型注释的交互式热图和 UpSet 图表。我们将通过几个示例展示如何通过富集计算和 UpSet 图表来解决疾病生物学和药物发现问题。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cc4a/9825581/41832922c1c5/gkac1033fig1.jpg

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