Roney Miah, Singh Gagandeep, Huq A K M Moyeenul, Forid Md Shaekh, Ishak Wan Maznah Binti Wan, Rullah Kamal, Aluwi Mohd Fadhlizil Fasihi Mohd, Tajuddin Saiful Nizam
Faculty of Industrial Sciences and Technology, Universiti Malaysia Pahang, Lebuhraya Tun Razak, 26300, Gambang, Kuantan, Pahang Darul Makmur, Malaysia.
Bio Aromatic Research Centre, Universiti Malaysia Pahang, Lebuhraya Tun Razak, 26300, Gambang, Kuantan, Pahang Darul Makmur, Malaysia.
Mol Biotechnol. 2024 Apr;66(4):696-706. doi: 10.1007/s12033-023-00667-5. Epub 2023 Feb 8.
The infection produced by the SARS-CoV-2 virus remains a significant health crisis worldwide. The lack of specific medications for COVID-19 necessitates a concerted effort to find the much-desired therapies for this condition. The main protease (M) of SARS-CoV-2 is a promising target, vital for virus replication and transcription. In this study, fifty pyrazole derivatives were tested for their pharmacokinetics and drugability, resulting in eight hit compounds. Subsequent molecular docking simulations on SARS-CoV-2 main protease afforded two lead compounds with strong affinity at the active site. Additionally, the molecular dynamics (MD) simulations of lead compounds (17 and 39), along with binding free energy calculations, were accomplished to validate the stability of the docked complexes and the binding poses achieved in docking experiments. Based on these findings, compound 17 and 39, with their favorable projected pharmacokinetics and pharmacological characteristics, are the proposed potential antiviral candidates which require further investigation to be used as anti-SARS-CoV-2 medication.
严重急性呼吸综合征冠状病毒2(SARS-CoV-2)引发的感染仍是全球范围内重大的健康危机。由于缺乏针对2019冠状病毒病(COVID-19)的特效药物,因此需要共同努力来寻找针对这种疾病的理想疗法。SARS-CoV-2的主要蛋白酶(M)是一个有前景的靶点,对病毒复制和转录至关重要。在本研究中,对五十种吡唑衍生物进行了药代动力学和药物可及性测试,得到了八种活性化合物。随后对SARS-CoV-2主要蛋白酶进行的分子对接模拟产生了两种在活性位点具有强亲和力的先导化合物。此外,还完成了先导化合物(17和39)的分子动力学(MD)模拟以及结合自由能计算,以验证对接复合物的稳定性以及对接实验中获得的结合构象。基于这些发现,化合物17和39具有良好的预测药代动力学和药理学特性,是拟议的潜在抗病毒候选物,需要进一步研究以用作抗SARS-CoV-2药物。