Mu Da-Shuai, Ouyang Yang, Chen Guan-Jun, Du Zong-Jun
State Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao, 266237 China.
Marine College, Shandong University, Weihai, 264209 China.
Mar Life Sci Technol. 2020 Jul 6;3(2):121-131. doi: 10.1007/s42995-020-00053-z. eCollection 2021 May.
Microorganisms are ubiquitous in the ocean environment and they play key roles in marine ecosystem function and service. However, many of their functions and phenotypes remain unknown because indigenous marine bacteria are mostly difficult to culture. Although many novel techniques have brought previously uncultured microbes into laboratory culture, there are still many most-wanted or key players that need to be cultured from marine environments. This review discusses possible reasons for 'unculturable microbes' and categorizes uncultured bacteria into three groups: dominant active bacteria, rare active bacteria, and dormant bacteria. This review also summarizes advances in cultivation techniques for culturing each group of unculturable bacteria. Simulating the natural environment is an effective strategy for isolating dominant active bacteria, whereas culturomics and enrichment culture methods are proposed for isolating rare active bacteria. For dormant bacteria, resuscitation culture is an appropriate strategy. Furthermore, the review provides a list of the most-wanted bacteria and proposes potential strategies for culturing these bacteria in marine environments. The review provides new insight into the development of strategies for the cultivation of specific groups of uncultured bacteria and therefore paves the way for the detection of novel microbes and their functions in marine ecosystems.
微生物在海洋环境中无处不在,它们在海洋生态系统功能和服务中发挥着关键作用。然而,由于大多数海洋本土细菌难以培养,它们的许多功能和表型仍不为人知。尽管许多新技术已将以前无法培养的微生物带入实验室培养,但仍有许多急需培养或关键的微生物有待从海洋环境中培养出来。本综述讨论了“不可培养微生物”的可能原因,并将未培养细菌分为三类:优势活性细菌、稀有活性细菌和休眠细菌。本综述还总结了培养每组不可培养细菌的培养技术进展。模拟自然环境是分离优势活性细菌的有效策略,而宏基因组学和富集培养方法则被提议用于分离稀有活性细菌。对于休眠细菌,复苏培养是一种合适的策略。此外,该综述列出了最急需培养的细菌,并提出了在海洋环境中培养这些细菌的潜在策略。该综述为培养特定组未培养细菌的策略发展提供了新的见解,因此为在海洋生态系统中发现新型微生物及其功能铺平了道路。