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EPI-7的全基因组通路探索

Genome-Wide Pathway Exploration of the EPI-7.

作者信息

Oh Yunseok, Mun Seyoung, Choi Young-Bong, Jo HyungWoo, Lee Dong-Geol, Han Kyudong

机构信息

Department of Bioconvergence Engineering, Dankook University, Jukjeon, Yongin 16890, Republic of Korea.

Department of Microbiology, College of Science & Technology, Dankook University, Cheonan 31116, Republic of Korea.

出版信息

Microorganisms. 2023 Mar 28;11(4):870. doi: 10.3390/microorganisms11040870.

Abstract

Functional cosmetics industries using skin microbiome screening and beneficial materials isolated from key microorganisms are receiving increasing attention. Since EPI-7 was first discovered in human skin, previous studies have confirmed that it can produce a new pyrimidine compound, 1,1'-biuracil, having anti-aging effects on human skin. Therefore, we conducted genomic analyses to judge the use value of EPI-7 and provide up-to-date information. Whole-genome sequencing analysis of EPI-7 was performed to generate new complete genome and annotation information. EPI-7 genome was subjected to comparative genomic analysis with a group of closely-related strains and skin flora strains through bioinformatic analysis. Furthermore, based on annotation information, we explored metabolic pathways for valuable substances that can be used in functional cosmetics. In this study, the whole-genome sequencing (WGS) and annotation results of EPI-7 were improved, and through comparative analysis, it was confirmed that the EPI-7 has more metabolite-related genes than comparison strains. In addition, we annotated the vital genes for biosynthesis of 20 amino acids, orotic acid, riboflavin (B2) and chorismate. In particular, we were able to prospect that orotic acid could accumulate inside EPI-7 under uracil-enriched conditions. Therefore, through a genomics approach, this study aims to provide genetic information for the hidden potential of EPI-7 and the strain development and biotechnology utilization to be conducted in further studies.

摘要

利用皮肤微生物群筛选和从关键微生物中分离出的有益物质的功能性化妆品行业正受到越来越多的关注。自EPI - 7首次在人类皮肤中被发现以来,先前的研究已证实它能产生一种对人类皮肤具有抗衰老作用的新嘧啶化合物1,1'-联尿嘧啶。因此,我们进行了基因组分析,以判断EPI - 7的使用价值并提供最新信息。对EPI - 7进行全基因组测序分析,以生成新的完整基因组和注释信息。通过生物信息学分析,将EPI - 7基因组与一组密切相关菌株和皮肤菌群菌株进行比较基因组分析。此外,基于注释信息,我们探索了可用于功能性化妆品的有价值物质的代谢途径。在本研究中,EPI - [7]的全基因组测序(WGS)和注释结果得到了改进,通过比较分析,证实EPI - 7比对照菌株具有更多与代谢物相关的基因。此外,我们注释了20种氨基酸、乳清酸、核黄素(B2)和分支酸生物合成的关键基因。特别是,我们能够预测在富含尿嘧啶的条件下,乳清酸可能会在EPI - 7内积累。因此,通过基因组学方法,本研究旨在为EPI - 7的潜在隐藏特性以及在进一步研究中进行的菌株开发和生物技术利用提供遗传信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9221/10143877/20f856576379/microorganisms-11-00870-g001.jpg

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