NHC Key Laboratory of Carcinogenesis and Hunan Key Laboratory of Cancer Metabolism, Hunan Cancer Hospital and the Affiliated Cancer Hospital of Xiangya School of Medicine, Central South University, Changsha, Hunan, 410008, P. R. China.
Key Laboratory of Carcinogenesis and Cancer Invasion of the Chinese Ministry of Education, Cancer Research Institute, Central South University, Changsha, Hunan, 410008, P. R. China.
Adv Sci (Weinh). 2023 Oct;10(30):e2302558. doi: 10.1002/advs.202302558. Epub 2023 Aug 26.
Single cell RNA sequencing (scRNA-seq) provides a great convenience for studying tumor occurrence and development for its ability to study gene expression at the individual cell level. However, patient-derived tumor tissues are composed of multiple types of cells including tumor cells and adjacent non-malignant cells such as stromal cells and immune cells. The spatial locations of various cells in situ tissues plays a pivotal role in the occurrence and development of tumors, which cannot be elucidated by scRNA-seq alone. Spatially resolved transcriptomics (SRT) technology emerges timely to explore the unrecognized relationship between the spatial background of a particular cell and its functions, and is increasingly used in cancer research. This review provides a systematic overview of the SRT technologies that are developed, in particular the more widely used cutting-edge SRT technologies based on next-generation sequencing (NGS). In addition, the main achievements by SRT technologies in precisely unveiling the underappreciated spatial locations on gene expression and cell function with unprecedented high-resolution in cancer research are emphasized, with the aim of developing more effective clinical therapeutics oriented to a deeper understanding of the interaction between tumor cells and surrounding non-malignant cells.
单细胞 RNA 测序 (scRNA-seq) 能够在单个细胞水平上研究基因表达,为研究肿瘤的发生和发展提供了极大的便利。然而,患者来源的肿瘤组织由多种类型的细胞组成,包括肿瘤细胞和邻近的非恶性细胞,如基质细胞和免疫细胞。原位组织中各种细胞的空间位置在肿瘤的发生和发展中起着关键作用,单凭 scRNA-seq 无法阐明这一点。空间分辨转录组学 (SRT) 技术及时出现,旨在探索特定细胞的空间背景与其功能之间尚未被认识的关系,并且越来越多地用于癌症研究。本综述系统地概述了已开发的 SRT 技术,特别是基于下一代测序 (NGS) 的更广泛使用的前沿 SRT 技术。此外,强调了 SRT 技术在精确揭示癌症研究中基因表达和细胞功能的未被充分认识的空间位置方面取得的主要成就,具有前所未有的高分辨率,旨在开发更有效的临床治疗方法,以更深入地了解肿瘤细胞与周围非恶性细胞之间的相互作用。