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利用多种细胞死亡模式鉴定与急性心肌梗死相关的重要基因。

Identification of important genes associated with acute myocardial infarction using multiple cell death patterns.

机构信息

Clifford Hospital, Guangzhou, China.

Guangzhou University of Chinese Medicine, Guangzhou, China.

出版信息

Cell Signal. 2023 Dec;112:110921. doi: 10.1016/j.cellsig.2023.110921. Epub 2023 Oct 13.

Abstract

Acute myocardial infarction (AMI) is a global health threat, and programmed cell death (PCD) plays a crucial role in its occurrence and development. In this study, integrated bioinformatics tools were used to explore new biomarkers and therapeutic targets in AMI. Thirteen types of PCD-related genes were identified through literature review, KEGG, and GSEA pathways. Gene expression matrices and clinical data from AMI patients and healthy controls were obtained from the GEO database. Statistical analysis in R identified 377 differentially expressed genes in AMI patients. Intersection analysis between the differentially expressed genes and PCD-related genes revealed 24 genes positively correlated with immune cells such as Neutrophils and Monocytes, while negatively correlated with T cells CD4 memory resting and Plasma cells. Unsupervised clustering analysis divided patients into two groups (C1 and C2) based on the expression levels of these 24 genes. GSVA analysis showed that C2 patients were more active in pathways related to maintaining normal cell morphology and promoting phagocytosis, suggesting a lower programmed cell death rate and a higher tendency to maintain cell survival. Two hub genes, TNFAIP3 and TP53INP2, were identified through LASSO regression analysis and SVM-RFE, and were validated using an external dataset and RT-qPCR、Western blot and ELISA analysis. These hub genes showed significantly higher expression and protein secretion levels in AMI patients compared to healthy individuals. Overall, regulating and controlling PCD, particularly through the identified hub genes, TNFAIP3 and TP53INP2, may provide new therapeutic strategies for improving the prognosis of AMI patients and preventing heart failure.

摘要

急性心肌梗死(AMI)是一种全球性的健康威胁,程序性细胞死亡(PCD)在其发生和发展中起着至关重要的作用。在本研究中,我们使用综合的生物信息学工具来探索 AMI 中的新生物标志物和治疗靶点。通过文献回顾、KEGG 和 GSEA 途径鉴定了 13 种与 PCD 相关的基因。从 GEO 数据库中获取 AMI 患者和健康对照的基因表达矩阵和临床数据。R 中的统计分析确定了 AMI 患者中 377 个差异表达基因。差异表达基因与 PCD 相关基因的交集分析揭示了 24 个与免疫细胞(如中性粒细胞和单核细胞)呈正相关,而与 T 细胞 CD4 记忆静止和浆细胞呈负相关的基因。基于这些 24 个基因的表达水平,无监督聚类分析将患者分为两组(C1 和 C2)。GSVA 分析表明,C2 患者在与维持正常细胞形态和促进吞噬作用相关的途径中更为活跃,这表明其程序性细胞死亡率较低,维持细胞存活的趋势较高。通过 LASSO 回归分析和 SVM-RFE 鉴定了两个枢纽基因 TNFAIP3 和 TP53INP2,并使用外部数据集和 RT-qPCR、Western blot 和 ELISA 分析进行了验证。与健康个体相比,这些枢纽基因在 AMI 患者中的表达和蛋白分泌水平明显更高。总的来说,调节和控制 PCD,特别是通过鉴定的枢纽基因 TNFAIP3 和 TP53INP2,可能为改善 AMI 患者的预后和预防心力衰竭提供新的治疗策略。

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