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对 (Hance) 中 MYB 基因的全基因组分析及鉴定其对干旱胁迫的响应成员。

Genome-Wide Analysis of MYB Genes in (Hance) and Identification of Members in Response to Drought Stress.

机构信息

Jiangxi Provincial Key Laboratory of Ex Situ Plant Conservation and Utilization, Lushan Botanical Garden, Chinese Academy of Sciences, Jiujiang 332900, China.

School of Life Sciences, Nanchang University, Nanchang 330031, China.

出版信息

Int J Mol Sci. 2023 Dec 29;25(1):465. doi: 10.3390/ijms25010465.

Abstract

Due to periodic water deficiency in karst environments, experiences sporadic drought stress in its habitat. Despite being one of the largest gene families and functionally diverse in terms of plant growth and development, MYB transcription factors in have not been studied. Here, a total of 230 MYB genes were identified in , including 67 1R-MYB, 155 R2R3-MYB, six 3R-MYB, and two 4R-MYB genes. The R2R3-type genes could be classified into 16 subgroups, while the remaining genes (1R-MYB, 3R-MYB, and 4R-MYB genes) were divided into 10 subgroups. Notably, the results of the phylogenetic analysis were further supported by the motif and gene structure analysis, which showed that individuals in the same subgroup had comparable motif and structure organization. Additionally, gene duplication and synteny analyses were performed to better understand the evolution of genes, and 291 pairs of segmental duplicated genes were found. Moreover, RNA-seq analysis revealed that the genes could be divided into five groups based on their expression characteristics. Furthermore, 11 genes that may be involved in drought stress response were identified through comparative analysis with . Notably, seven of these genes (, , , , , , and ) exhibited significant differences in expression between the control and drought stress treatments, suggesting that they may play important roles in drought stress response. These findings clarified the characteristics of the MYB gene family in , augmenting our comprehension of their potential roles in drought stress adaptation.

摘要

由于岩溶环境周期性缺水,在其栖息地会经历间歇性干旱胁迫。尽管 MYB 转录因子是植物生长和发育方面最大的基因家族之一,功能多样,但 中的 MYB 转录因子尚未得到研究。在这里,在 中总共鉴定出 230 个 MYB 基因,包括 67 个 1R-MYB、155 个 R2R3-MYB、6 个 3R-MYB 和 2 个 4R-MYB 基因。R2R3 型 基因可以分为 16 个亚组,而其余的 基因(1R-MYB、3R-MYB 和 4R-MYB 基因)分为 10 个亚组。值得注意的是,系统发育分析的结果进一步得到了基序和基因结构分析的支持,表明同一亚组中的个体具有相似的基序和结构组织。此外,还进行了基因复制和基因同线性分析,以更好地了解 基因的进化,发现了 291 对片段复制基因。此外,通过与 进行比较分析,发现 基因可以根据其表达特征分为五个组。此外,还鉴定出 11 个可能参与干旱胁迫响应的 基因。值得注意的是,其中 7 个基因( 、 、 、 、 、 和 )在对照和干旱胁迫处理之间的表达存在显著差异,表明它们可能在干旱胁迫响应中发挥重要作用。这些发现阐明了 中 MYB 基因家族的特征,增强了我们对其在干旱胁迫适应中潜在作用的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7541/10778706/a6258fccf8ad/ijms-25-00465-g001.jpg

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