Epidemiology Branch, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, North Carolina, USA.
Department of Epidemiology, Human Genetics, and Environmental Sciences, School of Public Health, The University of Texas Health Science Center at Houston, Houston, Texas, USA.
Allergy. 2024 Mar;79(3):643-655. doi: 10.1111/all.16000. Epub 2024 Jan 23.
Adult asthma is complex and incompletely understood. Plasma proteomics is an evolving technique that can both generate biomarkers and provide insights into disease mechanisms. We aimed to identify plasma proteomic signatures of adult asthma.
Protein abundance in plasma was measured in individuals from the Agricultural Lung Health Study (ALHS) (761 asthma, 1095 non-case) and the Atherosclerosis Risk in Communities study (470 asthma, 10,669 non-case) using the SOMAScan 5K array. Associations with asthma were estimated using covariate adjusted logistic regression and meta-analyzed using inverse-variance weighting. Additionally, in ALHS, we examined phenotypes based on both asthma and seroatopy (asthma with atopy (n = 207), asthma without atopy (n = 554), atopy without asthma (n = 147), compared to neither (n = 948)).
Meta-analysis of 4860 proteins identified 115 significantly (FDR<0.05) associated with asthma. Multiple signaling pathways related to airway inflammation and pulmonary injury were enriched (FDR<0.05) among these proteins. A proteomic score generated using machine learning provided predictive value for asthma (AUC = 0.77, 95% CI = 0.75-0.79 in training set; AUC = 0.72, 95% CI = 0.69-0.75 in validation set). Twenty proteins are targeted by approved or investigational drugs for asthma or other conditions, suggesting potential drug repurposing. The combined asthma-atopy phenotype showed significant associations with 20 proteins, including five not identified in the overall asthma analysis.
This first large-scale proteomics study identified over 100 plasma proteins associated with current asthma in adults. In addition to validating previous associations, we identified many novel proteins that could inform development of diagnostic biomarkers and therapeutic targets in asthma management.
成人哮喘复杂且尚未完全被理解。血浆蛋白质组学是一种不断发展的技术,既能产生生物标志物,又能深入了解疾病机制。我们旨在确定成人哮喘的血浆蛋白质组学特征。
使用 SOMAScan 5K 阵列测量农业肺健康研究(ALHS)(761 例哮喘,1095 例非病例)和社区动脉粥样硬化风险研究(470 例哮喘,10669 例非病例)中个体的血浆蛋白质丰度。使用协变量调整的逻辑回归估计与哮喘的关联,并使用逆方差加权进行荟萃分析。此外,在 ALHS 中,我们根据哮喘和血清学(哮喘伴过敏(n=207)、哮喘无过敏(n=554)、过敏无哮喘(n=147)与两者均无(n=948))检查表型。
对 4860 种蛋白质的荟萃分析确定了 115 种与哮喘显著相关的蛋白质(FDR<0.05)。这些蛋白质中富集了与气道炎症和肺损伤相关的多个信号通路(FDR<0.05)。使用机器学习生成的蛋白质组学评分对哮喘具有预测价值(训练集中 AUC=0.77(95%CI=0.75-0.79);验证集中 AUC=0.72(95%CI=0.69-0.75))。有 20 种蛋白质被批准或正在研究用于哮喘或其他疾病的药物靶向,这表明可能需要重新利用这些药物。联合哮喘过敏表型与 20 种蛋白质显著相关,其中 5 种蛋白质在总体哮喘分析中未被发现。
这是第一项大规模蛋白质组学研究,确定了 100 多种与成人当前哮喘相关的血浆蛋白。除了验证先前的关联外,我们还发现了许多新的蛋白质,这可能为哮喘管理中的诊断生物标志物和治疗靶点的开发提供信息。