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用于估算中国队列生物年龄的 DNA 甲基化时钟。

DNA methylation clocks for estimating biological age in Chinese cohorts.

机构信息

CAS Key Laboratory of Genomic and Precision Medicine, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation, Beijing 100101, China.

University of Chinese Academy of Sciences, Beijing 100049, China.

出版信息

Protein Cell. 2024 Jul 20;15(8):575-593. doi: 10.1093/procel/pwae011.

Abstract

Epigenetic clocks are accurate predictors of human chronological age based on the analysis of DNA methylation (DNAm) at specific CpG sites. However, a systematic comparison between DNA methylation data and other omics datasets has not yet been performed. Moreover, available DNAm age predictors are based on datasets with limited ethnic representation. To address these knowledge gaps, we generated and analyzed DNA methylation datasets from two independent Chinese cohorts, revealing age-related DNAm changes. Additionally, a DNA methylation aging clock (iCAS-DNAmAge) and a group of DNAm-based multi-modal clocks for Chinese individuals were developed, with most of them demonstrating strong predictive capabilities for chronological age. The clocks were further employed to predict factors influencing aging rates. The DNAm aging clock, derived from multi-modal aging features (compositeAge-DNAmAge), exhibited a close association with multi-omics changes, lifestyles, and disease status, underscoring its robust potential for precise biological age assessment. Our findings offer novel insights into the regulatory mechanism of age-related DNAm changes and extend the application of the DNAm clock for measuring biological age and aging pace, providing the basis for evaluating aging intervention strategies.

摘要

基于特定 CpG 位点的 DNA 甲基化(DNAm)分析,表观遗传时钟是准确预测人类实际年龄的指标。然而,目前尚未对 DNA 甲基化数据与其他组学数据集进行系统比较。此外,现有的 DNAm 年龄预测器基于代表性有限的数据集。为了解决这些知识空白,我们生成并分析了来自两个独立的中国队列的 DNA 甲基化数据集,揭示了与年龄相关的 DNAm 变化。此外,我们开发了一种基于 DNAm 的中国人群多模态时钟(iCAS-DNAmAge)和一组 DNAm 多模态时钟,其中大多数对实际年龄具有很强的预测能力。这些时钟进一步用于预测影响衰老速度的因素。多模态衰老特征(compositeAge-DNAmAge)衍生的 DNAm 衰老时钟与多组学变化、生活方式和疾病状态密切相关,突出了其在精确生物学年龄评估方面的强大潜力。我们的研究结果为年龄相关的 DNAm 变化的调控机制提供了新的见解,并扩展了 DNAm 时钟在测量生物学年龄和衰老速度方面的应用,为评估衰老干预策略提供了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cd1a/11259550/29c37aee7e55/pwae011_fig1.jpg

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