Editorial: Exploring genetic characteristics and molecular mechanisms of host adaptation of viruses with artificial intelligence (AI) or (and) biological (BIO) approaches.
作者信息
Li Jing, Li Xiao-He, Ebrahimie Esmaeil, Huang Lei
机构信息
State Key Laboratory of Pathogen and Biosecurity, Academy of Military Medical Science, Beijing, China.
College of Basic Medical Sciences, Inner Mongolia Medical University, Hohhot, China.
出版信息
Front Cell Infect Microbiol. 2024 Aug 26;14:1474097. doi: 10.3389/fcimb.2024.1474097. eCollection 2024.
Abstract
摘要
相似文献
1
Editorial: Exploring genetic characteristics and molecular mechanisms of host adaptation of viruses with artificial intelligence (AI) or (and) biological (BIO) approaches.
Front Cell Infect Microbiol. 2024 Aug 26;14:1474097. doi: 10.3389/fcimb.2024.1474097. eCollection 2024.
2
Identifying genetic markers of adaptation for surveillance of viral host jumps.
Nat Rev Microbiol. 2010 Nov;8(11):802-13. doi: 10.1038/nrmicro2440. Epub 2010 Oct 12.
3
Significance of Artificial Intelligence in the Study of Virus-Host Cell Interactions.
Biomolecules. 2024 Jul 26;14(8):911. doi: 10.3390/biom14080911.
4
Viruses: foe, freeloader or friend?
Curr Opin Microbiol. 2012 Aug;15(4):486-9. doi: 10.1016/j.mib.2012.07.006. Epub 2012 Aug 8.
5
Enemies with benefits: mutualistic interactions of viruses with lower eukaryotes.
Arch Virol. 2018 Apr;163(4):821-830. doi: 10.1007/s00705-017-3686-5. Epub 2018 Jan 6.
6
Endogenous viruses: insights into viral evolution and impact on host biology.
Nat Rev Genet. 2012 Mar 16;13(4):283-96. doi: 10.1038/nrg3199.
7
Discovery of Virus-Host interactions using bioinformatic tools.
Methods Cell Biol. 2022;169:169-198. doi: 10.1016/bs.mcb.2022.02.001. Epub 2022 Mar 4.
8
Chemical Methods for Probing Virus-Host Proteomic Interactions.
ACS Infect Dis. 2016 Nov 11;2(11):773-786. doi: 10.1021/acsinfecdis.6b00084. Epub 2016 Jun 29.
9
The evolution and genetics of virus host shifts.
PLoS Pathog. 2014 Nov 6;10(11):e1004395. doi: 10.1371/journal.ppat.1004395. eCollection 2014 Nov.
10
Host-virus interactions: from the perspectives of epigenetics.
Rev Med Virol. 2014 Jul;24(4):223-41. doi: 10.1002/rmv.1783. Epub 2014 Feb 21.
本文引用的文献
1
Spike deep mutational scanning helps predict success of SARS-CoV-2 clades.
Nature. 2024 Jul;631(8021):617-626. doi: 10.1038/s41586-024-07636-1. Epub 2024 Jul 3.
2
Compositional features analysis by machine learning in genome represents linear adaptation of monkeypox virus.
Front Genet. 2024 Mar 1;15:1361952. doi: 10.3389/fgene.2024.1361952. eCollection 2024.
3
CoVEffect: interactive system for mining the effects of SARS-CoV-2 mutations and variants based on deep learning.
Gigascience. 2022 Dec 28;12. doi: 10.1093/gigascience/giad036. Epub 2023 May 23.
4
Experimental Evolution of the TolC-Receptor Phage U136B Functionally Identifies a Tail Fiber Protein Involved in Adsorption through Strong Parallel Adaptation.
Appl Environ Microbiol. 2023 Jun 28;89(6):e0007923. doi: 10.1128/aem.00079-23. Epub 2023 May 16.
5
The D405N Mutation in the Spike Protein of SARS-CoV-2 Omicron BA.5 Inhibits Spike/Integrins Interaction and Viral Infection of Human Lung Microvascular Endothelial Cells.
Viruses. 2023 Jan 24;15(2):332. doi: 10.3390/v15020332.
6
The role of influenza-A virus and coronavirus viral glycoprotein cleavage in host adaptation.
Curr Opin Virol. 2023 Feb;58:101303. doi: 10.1016/j.coviro.2023.101303. Epub 2023 Jan 18.
7
The P681H Mutation in the Spike Glycoprotein of the Alpha Variant of SARS-CoV-2 Escapes IFITM Restriction and Is Necessary for Type I Interferon Resistance.
J Virol. 2022 Dec 14;96(23):e0125022. doi: 10.1128/jvi.01250-22. Epub 2022 Nov 9.
8
SARS-CoV-2 Delta and Omicron variants evade population antibody response by mutations in a single spike epitope.
Nat Microbiol. 2022 Oct;7(10):1635-1649. doi: 10.1038/s41564-022-01235-4. Epub 2022 Sep 23.
9
Deep mutational scanning identifies SARS-CoV-2 Nucleocapsid escape mutations of currently available rapid antigen tests.
Cell. 2022 Sep 15;185(19):3603-3616.e13. doi: 10.1016/j.cell.2022.08.010. Epub 2022 Aug 29.
10
Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus.
Nat Med. 2022 Aug;28(8):1569-1572. doi: 10.1038/s41591-022-01907-y. Epub 2022 Jun 24.
Zotero 插件