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鞘翅目天蛾科云纹天蛾染色体水平基因组组装与注释。

Chromosome-level genome assembly and annotation of Clanis bilineata tsingtauica Mell (Lepidoptera: Sphingidae).

机构信息

Laboratory of Biology and Genetics Improvement of Soybean, Ministry of Agriculture, Zhongshan Biological Breeding Laboratory (ZSBBL), National Innovation Platform for Soybean Breeding and Industry Education Integration, State Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Jiangsu Collaborative Innovation Center for Modern Crop Production, College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China.

出版信息

Sci Data. 2024 Sep 30;11(1):1062. doi: 10.1038/s41597-024-03853-5.

Abstract

The soybean hawkmoth Clanis bilineata tsingtauica Mell (Lepidoptera, Sphingidae; CBT), as one of the main leaf-chewing pests of soybeans, has gained popularity as an edible insect in China recently due to its high nutritional value. However, high-quality genome of CBT remains unclear, which greatly limits further research. In the present study, we assembled a high-quality chromosome-level genome of CBT using PacBio HiFi reads and Hi-C technologies for the first time. The size of the assembled genome is 477.45 Mb with a contig N50 length of 17.43 Mb. After Hi-C scaffolding, the contigs were anchored to 29 chromosomes with a mapping rate of 99.61%. Benchmarking Universal Single-Copy Orthologues (BUSCO) completeness value is 99.49%. The genome contains 252.16 Mb of repeat elements and 14,214 protein-coding genes. In addition, chromosomal synteny analysis showed that the genome of CBT has a strong synteny with that of Manduca sexta. In conclusion, this high-quality genome provides an important resource for future studies of CBT and contributes to the development of integrated pest management strategies.

摘要

中国豆天蛾 Clanis bilineata tsingtauica Mell(鳞翅目,天蛾科;CBT),作为大豆的主要食叶害虫之一,由于其高营养价值,最近在中国作为食用昆虫而广受欢迎。然而,CBT 的高质量基因组仍不清楚,这极大地限制了进一步的研究。在本研究中,我们首次使用 PacBio HiFi 读取和 Hi-C 技术组装了 CBT 的高质量染色体水平基因组。组装的基因组大小为 477.45 Mb,contig N50 长度为 17.43 Mb。经过 Hi-C 支架后,将 contigs 锚定到 29 条染色体上,映射率为 99.61%。基准通用单拷贝同源物(BUSCO)完整性值为 99.49%。基因组包含 252.16 Mb 的重复元件和 14,214 个蛋白质编码基因。此外,染色体同线性分析表明,CBT 的基因组与曼陀罗 M.sexta 的基因组具有很强的同线性。总之,这个高质量的基因组为 CBT 的未来研究提供了重要的资源,并为综合害虫管理策略的发展做出了贡献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0330/11443141/8eb986787e76/41597_2024_3853_Fig1_HTML.jpg

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