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对74000多例病例中的截短变异进行分析,发现了新的临床相关基因区域。

Analysis of Truncating Variants in >74 000 Cases Reveals New Clinically Relevant Gene Regions.

作者信息

Vatta Matteo, Regalado Ellen, Parfenov Michael, Swartzlander Dan, Nagl Andrea, Mannello Meghan, Lewis Rachel, Clemens Daniel, Garcia John, Ellsworth Rachel E, Morales Ana, Ting Yi-Lee, Aradhya Swaroop

机构信息

Labcorp Genetics Inc (formerly Invitae Corporation), San Francisco, CA (M.V., E.R., M.P., D.S., A.N., M.M., R.L., D.C., J.G., R.E.E., A.M., Y.-L.T., S.A.).

Department of Pathology, Stanford University School of Medicine, CA (S.A.).

出版信息

Circ Genom Precis Med. 2025 Apr;18(2):e004982. doi: 10.1161/CIRCGEN.124.004982. Epub 2025 Feb 19.

Abstract

BACKGROUND

Truncating variants (TTNtvs) in the titin () gene have been associated with cardiomyopathies or arrhythmias (C/A) and autosomal recessive neuromuscular diseases (NM). However, the clinical significance of TTNtvs across the entire coding sequence of has not been comprehensively assessed. The purpose of this study was to examine the burden of TTNtvs in C/A and NM cases compared with controls in the genome aggregation database.

METHODS

This was a retrospective study of probands who underwent multigene testing (49 740 C/A panel, 24 514 NM panel) that included from November 2017 to October 2021. Burden testing was performed using controls in the genome aggregation database v3.1.2 database, and the analysis was stratified by exon/band location and exon usage in cardiac or skeletal muscle. Frequency and odds ratio of TTNtv alleles in C/A or NM cases and genome aggregation database controls were measured.

RESULTS

There were 2446 (4.9%) C/A and 482 (2.0%) NM cases with 2446 and 528 TTNtv alleles, respectively. TTNtvs in all bands were significantly enriched in both C/A and NM cases compared with controls. A significant enrichment of TTNtvs in C/A was observed for exon 358 of the M-band (odds ratio, 2.55 [95% CI, 1.85-3.54]) but not the other M-band exons.

CONCLUSIONS

In the largest single-site cohort of C/A and NM cases with TTNtvs, an enrichment of TTNtvs across was observed. These findings expand the clinically relevant regions of .

摘要

背景

肌联蛋白(TTN)基因中的截短变异(TTNtvs)与心肌病或心律失常(C/A)以及常染色体隐性神经肌肉疾病(NM)相关。然而,TTNtvs在TTN整个编码序列中的临床意义尚未得到全面评估。本研究的目的是在基因组聚合数据库中,比较C/A和NM病例与对照中TTNtvs的负担情况。

方法

这是一项对2017年11月至2021年10月期间接受多基因检测(49740个C/A检测组,24514个NM检测组)的先证者进行的回顾性研究。使用基因组聚合数据库v3.1.2数据库中的对照进行负担检测,并根据外显子/条带位置以及心脏或骨骼肌中外显子的使用情况进行分层分析。测量C/A或NM病例以及基因组聚合数据库对照中TTNtv等位基因的频率和比值比。

结果

分别有2446例(4.9%)C/A病例和482例(2.0%)NM病例携带2446个和528个TTNtv等位基因。与对照相比,所有条带中的TTNtvs在C/A和NM病例中均显著富集。在M带的外显子358中观察到C/A中TTNtvs显著富集(比值比,2.55 [95% CI,1.85 - 3.54]),但其他M带外显子未观察到。

结论

在TTNtvs的C/A和NM病例的最大单中心队列中,观察到TTNtvs的富集。这些发现扩展了TTN的临床相关区域。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf38/11999099/41ea1e001267/hcg-18-e004982-g003.jpg

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