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人类健康与疾病中DNA甲基化组分析的预测能力。

The predictive power of profiling the DNA methylome in human health and disease.

作者信息

Christofidou Paraskevi, Bell Christopher G

机构信息

William Harvey Research Institute, Barts & The London Faculty of Medicine and Dentistry, Queen Mary University of London, London, UK.

QMUL Centre for Epigenetics, Queen Mary University of London, London, UK.

出版信息

Epigenomics. 2025 Jun;17(9):599-610. doi: 10.1080/17501911.2025.2500907. Epub 2025 May 10.

Abstract

Early and accurate diagnosis significantly improves the chances of disease survival. DNA methylation (5mC), the major DNA modification in the human genome, is now recognized as a biomarker of immense clinical potential. This is due to its ability to delineate precisely cell-type, quantitate both internal and external exposures, as well as tracking chronological and biological components of the aging process. Here, we survey the current state of DNA methylation as a biomarker and predictor of traits and disease. This includes Epigenome-wide association study (EWAS) findings that inform Methylation Risk Scores (MRS), EpiScore long-term estimators of plasma protein levels, and machine learning (ML) derived DNA methylation clocks. These all highlight the significant benefits of accessible peripheral blood DNA methylation as a surrogate measure. However, detailed DNA methylation biopsy analysis in real-time is also empowering pathological diagnosis. Furthermore, moving forward, in this multi-omic and biobank scale era, novel insights will be enabled by the amplified power of increasing sample sizes and data integration.

摘要

早期准确诊断可显著提高疾病存活几率。DNA甲基化(5mC)是人类基因组中的主要DNA修饰,现已被视为具有巨大临床潜力的生物标志物。这是因为它能够精确描绘细胞类型、定量内部和外部暴露,以及追踪衰老过程的时间和生物学成分。在此,我们综述了DNA甲基化作为性状和疾病生物标志物及预测指标的现状。这包括全表观基因组关联研究(EWAS)的结果,这些结果为甲基化风险评分(MRS)、血浆蛋白水平的长期表观遗传评分估计值以及机器学习(ML)衍生的DNA甲基化时钟提供了信息。这些都突出了可获取的外周血DNA甲基化作为替代指标的显著优势。然而,实时详细的DNA甲基化活检分析也有助于病理诊断。此外,展望未来,在这个多组学和生物样本库规模的时代,样本量增加和数据整合的强大力量将带来新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/58d7/12143711/ca0c521f6a88/IEPI_A_2500907_F0001_OC.jpg

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