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通用蛋白质知识库(UniProt)。

UniProt: the Universal Protein knowledgebase.

作者信息

Apweiler Rolf, Bairoch Amos, Wu Cathy H, Barker Winona C, Boeckmann Brigitte, Ferro Serenella, Gasteiger Elisabeth, Huang Hongzhan, Lopez Rodrigo, Magrane Michele, Martin Maria J, Natale Darren A, O'Donovan Claire, Redaschi Nicole, Yeh Lai-Su L

机构信息

The EMBL Outstation--European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

出版信息

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D115-9. doi: 10.1093/nar/gkh131.

Abstract

To provide the scientific community with a single, centralized, authoritative resource for protein sequences and functional information, the Swiss-Prot, TrEMBL and PIR protein database activities have united to form the Universal Protein Knowledgebase (UniProt) consortium. Our mission is to provide a comprehensive, fully classified, richly and accurately annotated protein sequence knowledgebase, with extensive cross-references and query interfaces. The central database will have two sections, corresponding to the familiar Swiss-Prot (fully manually curated entries) and TrEMBL (enriched with automated classification, annotation and extensive cross-references). For convenient sequence searches, UniProt also provides several non-redundant sequence databases. The UniProt NREF (UniRef) databases provide representative subsets of the knowledgebase suitable for efficient searching. The comprehensive UniProt Archive (UniParc) is updated daily from many public source databases. The UniProt databases can be accessed online (http://www.uniprot.org) or downloaded in several formats (ftp://ftp.uniprot.org/pub). The scientific community is encouraged to submit data for inclusion in UniProt.

摘要

为科学界提供一个单一、集中、权威的蛋白质序列和功能信息资源库,瑞士蛋白质数据库(Swiss-Prot)、欧洲生物信息学研究所蛋白质序列数据库(TrEMBL)和蛋白质信息资源库(PIR)的相关活动联合起来,组成了通用蛋白质知识库(UniProt)联盟。我们的使命是提供一个全面、经过充分分类、注释丰富且准确的蛋白质序列知识库,并具备广泛的交叉引用和查询界面。中央数据库将分为两个部分,分别对应大家熟悉的瑞士蛋白质数据库(Swiss-Prot,完全手动注释条目)和欧洲生物信息学研究所蛋白质序列数据库(TrEMBL,通过自动分类、注释和广泛的交叉引用进行扩充)。为方便进行序列搜索,UniProt还提供了几个非冗余序列数据库。UniProt非冗余参考序列数据库(UniRef)提供了适合高效搜索的知识库代表性子集。全面的UniProt存档库(UniParc)每天都会根据许多公共源数据库进行更新。可以通过在线方式(http://www.uniprot.org)访问UniProt数据库,也可以以多种格式进行下载(ftp://ftp.uniprot.org/pub)。鼓励科学界提交数据以便纳入UniProt。

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