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异烟酰胺中的酰胺旋转势垒:动态核磁共振和从头算研究。

The amide rotational barrier in isonicotinamide: Dynamic NMR and ab initio studies.

作者信息

Leskowitz Garett M, Ghaderi Nima, Olsen Ryan A, Pederson Kari, Hatcher Mary E, Mueller Leonard J

机构信息

Department of Chemistry, University of California, Riverside, California 92521, USA.

出版信息

J Phys Chem A. 2005 Feb 17;109(6):1152-8. doi: 10.1021/jp0460689.

Abstract

We report use of dynamic nuclear magnetic resonance (NMR) to measure the amide rotational barrier in isonicotinamide. A significant challenge to obtaining good transition rates from dynamic NMR data is suppression of errors due to inherent line widths associated with transverse relaxation. We address this challenge with a fitting procedure that incorporates transverse relaxation over the temperature range of interest simply and reliably. The fitting model is nonlinear in only one of the fit parameters, namely, the activation enthalpy. This reduces parameter estimation to solution of a single transcendental equation, which avoids both a fine search over a multidimensional parameter space and extrapolation of a "limiting line width" solely from slow-exchange data. The activation enthalpy Delta H++ measured for isonicotinamide, +14.1 +/- 0.2 kcal/mol, falls between those of its regioisomers picolinamide and nicotinamide, which were reported in an earlier study. In that study, ab initio calculations of the rotational barriers helped to discern the relative importance of steric, electronic, and hydrogen-bonding effects in this biochemically significant combination of pyridine-ring and carboxamide moieties. A direct comparison between isonicotinamide and nicotinamide, where steric and hydrogen-bonding effects differ only slightly, permits a closer study of electronic considerations.

摘要

我们报告了使用动态核磁共振(NMR)来测量异烟酰胺中的酰胺旋转势垒。从动态NMR数据获得良好跃迁速率的一个重大挑战是抑制由于与横向弛豫相关的固有线宽引起的误差。我们通过一种拟合程序来应对这一挑战,该程序在感兴趣的温度范围内简单可靠地纳入了横向弛豫。拟合模型仅在一个拟合参数(即活化焓)上是非线性的。这将参数估计简化为一个单超越方程的求解,既避免了在多维参数空间中进行精细搜索,也避免了仅从慢交换数据外推“极限线宽”。异烟酰胺测得的活化焓ΔH++为 +14.1±0.2 kcal/mol,介于其区域异构体吡啶甲酰胺和烟酰胺之间,这在 earlier study中已有报道。在该研究中,旋转势垒的从头算计算有助于辨别吡啶环和羧酰胺部分这种具有生物化学意义的组合中空间、电子和氢键效应的相对重要性。异烟酰胺和烟酰胺之间的直接比较,其中空间和氢键效应仅略有不同,允许对电子因素进行更深入的研究。

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