Ferrer Manuel, Golyshina Olga, Beloqui Ana, Golyshin Peter N
Division of Applied Biocatalysis, Institute of Catalysis, CSIC, Cantoblanco, 28049 Madrid, Spain.
Curr Opin Microbiol. 2007 Jun;10(3):207-14. doi: 10.1016/j.mib.2007.05.004. Epub 2007 Jun 4.
Current advances in metagenomics have revolutionized the research in fields of microbial ecology and biotechnology, enabling not only a glimpse into the uncultured microbial population and mechanistic understanding of possible biogeochemical cycles and lifestyles of extreme organisms but also the high-throughput discovery of new enzymes for industrial bioconversions. Nowadays, the genetic and enzymatic differences across the gradients from 'neutral and pristine' to 'extreme and polluted' environments are well documented. Yet, extremophilic organisms are possibly the least well understood because our ability to study and understand their metabolic potential has been hampered by our inability to isolate pure cultures. There are at least two obstacles for reaping the fruit of the microbial diversity of extremophiles: first, in spite of the recent progress in development of new culturing techniques most extremophiles cannot be cultured using traditional culturing technologies; and second, the problem of the very low biomass densities often occurs under the conditions hostile for life, which often do not yield enough DNA and reduces the effectiveness of cloning.
宏基因组学的当前进展彻底改变了微生物生态学和生物技术领域的研究,不仅使人们能够初步了解未培养的微生物群体,对可能的生物地球化学循环以及极端生物的生活方式有了机理上的认识,还能高通量发现用于工业生物转化的新酶。如今,从“中性和原始”到“极端和污染”环境梯度下的遗传和酶差异已有充分记录。然而,嗜极生物可能是了解最少的,因为我们研究和理解其代谢潜力的能力因无法分离纯培养物而受到阻碍。要收获嗜极微生物多样性的成果至少有两个障碍:第一,尽管新培养技术的开发最近取得了进展,但大多数嗜极生物无法用传统培养技术培养;第二,在不利于生命的条件下经常会出现生物量密度极低的问题,这往往无法产生足够的DNA并降低克隆的效率。