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人类病原体无脊椎传播媒介的基因组资源以及VectorBase的作用。

Genomic resources for invertebrate vectors of human pathogens, and the role of VectorBase.

作者信息

Megy K, Hammond M, Lawson D, Bruggner R V, Birney E, Collins F H

机构信息

EMBL, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SD, UK.

出版信息

Infect Genet Evol. 2009 May;9(3):308-13. doi: 10.1016/j.meegid.2007.12.007. Epub 2008 Jan 3.

Abstract

High-throughput genome sequencing techniques have now reached vector biology with an emphasis on those species that are vectors of human pathogens. The first mosquito to be sequenced was Anopheles gambiae, the vector for Plasmodium parasites that cause malaria. Further mosquitoes have followed: Aedes aegypti (yellow fever and dengue fever vector) and Culex pipiens (lymphatic filariasis and West Nile fever). Species that are currently in sequencing include the body louse Pediculus humanus (Typhus vector), the triatomine Rhodnius prolixus (Chagas disease vector) and the tick Ixodes scapularis (Lyme disease vector). The motivations for sequencing vector genomes are to further understand vector biology, with an eye on developing new control strategies (for example novel chemical attractants or repellents) or understanding the limitations of current strategies (for example the mechanism of insecticide resistance); to analyse the mechanisms driving their evolution; and to perform an exhaustive analysis of the gene repertory. The proliferation of genomic data creates the need for efficient and accessible storage. We present VectorBase, a genomic resource centre that is both involved in the annotation of vector genomes and act as a portal for access to the genomic information (http://www.vectorbase.org).

摘要

高通量基因组测序技术现已应用于媒介生物学领域,重点关注那些作为人类病原体传播媒介的物种。首个被测序的蚊子是冈比亚按蚊,它是导致疟疾的疟原虫的传播媒介。随后又有更多蚊子被测序:埃及伊蚊(黄热病和登革热的传播媒介)和致倦库蚊(淋巴丝虫病和西尼罗河热的传播媒介)。目前正在进行测序的物种包括人体虱(斑疹伤寒传播媒介)、锥蝽(查加斯病传播媒介)和肩突硬蜱(莱姆病传播媒介)。对媒介基因组进行测序的目的是进一步了解媒介生物学,着眼于开发新的控制策略(例如新型化学引诱剂或驱避剂)或了解当前策略的局限性(例如杀虫剂抗性机制);分析推动其进化的机制;并对基因库进行详尽分析。基因组数据的激增产生了对高效且可访问存储的需求。我们推出了VectorBase,这是一个基因组资源中心,它既参与媒介基因组的注释工作,又充当获取基因组信息的门户(http://www.vectorbase.org)。

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本文引用的文献

1
A Chado case study: an ontology-based modular schema for representing genome-associated biological information.
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2
Tick genomics: the Ixodes genome project and beyond.
Int J Parasitol. 2007 Oct;37(12):1297-305. doi: 10.1016/j.ijpara.2007.05.011. Epub 2007 Jun 9.
3
Evolutionary dynamics of immune-related genes and pathways in disease-vector mosquitoes.
Science. 2007 Jun 22;316(5832):1738-43. doi: 10.1126/science.1139862.
4
The sialotranscriptome of the blood-sucking bug Triatoma brasiliensis (Hemiptera, Triatominae).
Insect Biochem Mol Biol. 2007 Jul;37(7):702-12. doi: 10.1016/j.ibmb.2007.04.004. Epub 2007 Apr 14.
5
Genome sequence of Aedes aegypti, a major arbovirus vector.
Science. 2007 Jun 22;316(5832):1718-23. doi: 10.1126/science.1138878. Epub 2007 May 17.
6
Transcriptional analysis of insecticide resistance in Anopheles stephensi using cross-species microarray hybridization.
Insect Mol Biol. 2007 Jun;16(3):315-24. doi: 10.1111/j.1365-2583.2007.00728.x. Epub 2007 Apr 13.
8
An insight into the sialome of Anopheles funestus reveals an emerging pattern in anopheline salivary protein families.
Insect Biochem Mol Biol. 2007 Feb;37(2):164-75. doi: 10.1016/j.ibmb.2006.11.005. Epub 2006 Nov 22.
9
An insight into the sialome of the adult female mosquito Aedes albopictus.
Insect Biochem Mol Biol. 2007 Feb;37(2):107-27. doi: 10.1016/j.ibmb.2006.10.007. Epub 2006 Nov 7.
10
AphidBase: a database for aphid genomic resources.
Bioinformatics. 2007 Mar 15;23(6):783-4. doi: 10.1093/bioinformatics/btl682. Epub 2007 Jan 19.

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