Shadow enhancers as a source of evolutionary novelty.
作者信息
Hong Joung-Woo, Hendrix David A, Levine Michael S
机构信息
Department of Molecular and Cell Biology, Division of Genetics, Genomics, and Development, Center for Integrative Genomics, University of California, Berkeley, CA 94720, USA.
出版信息
Science. 2008 Sep 5;321(5894):1314. doi: 10.1126/science.1160631.
Abstract
摘要
相似文献
1
Shadow enhancers as a source of evolutionary novelty.
Science. 2008 Sep 5;321(5894):1314. doi: 10.1126/science.1160631.
2
Genetics. Enhancing gene regulation.
Science. 2008 Sep 5;321(5894):1300-1. doi: 10.1126/science.1163568.
3
Conservation of enhancer location in divergent insects.
Proc Natl Acad Sci U S A. 2009 Aug 25;106(34):14414-9. doi: 10.1073/pnas.0905754106. Epub 2009 Aug 3.
4
Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo.
Genes Dev. 2007 Feb 15;21(4):385-90. doi: 10.1101/gad.1509607.
5
Quantitative analysis of binding motifs mediating diverse spatial readouts of the Dorsal gradient in the Drosophila embryo.
Proc Natl Acad Sci U S A. 2005 Apr 5;102(14):4966-71. doi: 10.1073/pnas.0409414102. Epub 2005 Mar 28.
6
Evolved Repression Overcomes Enhancer Robustness.
Dev Cell. 2016 Dec 5;39(5):572-584. doi: 10.1016/j.devcel.2016.10.010. Epub 2016 Nov 10.
7
Temporal coordination of gene networks by Zelda in the early Drosophila embryo.
PLoS Genet. 2011 Oct;7(10):e1002339. doi: 10.1371/journal.pgen.1002339. Epub 2011 Oct 20.
8
Organization of developmental enhancers in the Drosophila embryo.
Nucleic Acids Res. 2009 Sep;37(17):5665-77. doi: 10.1093/nar/gkp619. Epub 2009 Aug 3.
9
Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition.
PLoS Genet. 2011 Oct;7(10):e1002266. doi: 10.1371/journal.pgen.1002266. Epub 2011 Oct 20.
10
Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.
Genome Biol. 2004;5(9):R61. doi: 10.1186/gb-2004-5-9-r61. Epub 2004 Aug 20.
引用本文的文献
1
In vivo mapping of mutagenesis sensitivity of human enhancers.
Nature. 2025 Jun 18. doi: 10.1038/s41586-025-09182-w.
2
Divergent combinations of enhancers encode spatial gene expression.
Nat Commun. 2025 Jun 2;16(1):5091. doi: 10.1038/s41467-025-60482-1.
3
Biological roles of enhancer RNA m6A modification and its implications in cancer.
Cell Commun Signal. 2025 May 30;23(1):254. doi: 10.1186/s12964-025-02254-4.
4
An Osteoblast-Specific Enhancer and Subenhancer Cooperatively Regulate Expression in Chondrocytes.
Int J Mol Sci. 2025 Feb 14;26(4):1653. doi: 10.3390/ijms26041653.
5
Modular organization of enhancer network provides transcriptional robustness in mammalian development.
Nucleic Acids Res. 2025 Jan 11;53(2). doi: 10.1093/nar/gkae1323.
6
Two coacting shadow enhancers regulate twin of eyeless expression during early Drosophila development.
Genetics. 2025 Jan 8;229(1):1-43. doi: 10.1093/genetics/iyae176.
7
Entangled and non-modular enhancer sequences producing independent spatial activities.
Sci Adv. 2024 Nov 22;10(47):eadr9856. doi: 10.1126/sciadv.adr9856. Epub 2024 Nov 20.
8
Decoding the epigenetics and chromatin loop dynamics of androgen receptor-mediated transcription.
Nat Commun. 2024 Nov 3;15(1):9494. doi: 10.1038/s41467-024-53758-5.
9
VISTA Enhancer browser: an updated database of tissue-specific developmental enhancers.
Nucleic Acids Res. 2025 Jan 6;53(D1):D324-D330. doi: 10.1093/nar/gkae940.
10
Understanding developmental system drift.
Development. 2024 Oct 15;151(20). doi: 10.1242/dev.203054. Epub 2024 Oct 17.
本文引用的文献
1
The evolution of gene regulation underlies a morphological difference between two Drosophila sister species.
Cell. 2008 Mar 7;132(5):783-93. doi: 10.1016/j.cell.2008.01.014.
2
Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo.
Genes Dev. 2007 Feb 15;21(4):385-90. doi: 10.1101/gad.1509607.
3
A functional screen for sonic hedgehog regulatory elements across a 1 Mb interval identifies long-range ventral forebrain enhancers.
Development. 2006 Feb;133(4):761-72. doi: 10.1242/dev.02239. Epub 2006 Jan 11.
4
Whole-genome analysis of dorsal-ventral patterning in the Drosophila embryo.
Cell. 2002 Nov 27;111(5):687-701. doi: 10.1016/s0092-8674(02)01087-5.
5
Redundant and unique roles of two enhancer elements in the TCRgamma locus in gene regulation and gammadelta T cell development.
Immunity. 2002 Mar;16(3):453-63. doi: 10.1016/s1074-7613(02)00285-6.
6
Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo.
Proc Natl Acad Sci U S A. 2002 Jan 22;99(2):763-8. doi: 10.1073/pnas.012591199. Epub 2001 Dec 18.
Zotero 插件