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ADBP-1调控一种ADAR RNA编辑酶,以拮抗秀丽隐杆线虫中RNA干扰介导的基因沉默。

ADBP-1 regulates an ADAR RNA-editing enzyme to antagonize RNA-interference-mediated gene silencing in Caenorhabditis elegans.

作者信息

Ohta Hiromitsu, Fujiwara Manabi, Ohshima Yasumi, Ishihara Takeshi

机构信息

Department of Applied Life Science, Sojo University, Kumamoto 860-0082, Japan.

出版信息

Genetics. 2008 Oct;180(2):785-96. doi: 10.1534/genetics.108.093310. Epub 2008 Sep 9.

Abstract

Small interfering RNAs (siRNAs) and microRNAs (miRNAs) mediate gene silencing through evolutionarily conserved pathways. In Caenorhabditis elegans, the siRNA/miRNA pathways are also known to affect transgene expression. To identify genes that regulate the efficiencies of the siRNA/miRNA pathways, we used the expression level of a transgene as an indicator of gene silencing and isolated a transgene-silencing mutant, adbp-1 (ADR-2 binding protein). The adbp-1 mutation caused transgene silencing in hypodermal and intestinal cells in a cell-autonomous manner, depending on the RNA interference (RNAi) machinery. The adbp-1 gene encodes a protein with no conserved domains that is localized in the nucleus. Yeast two-hybrid screening and co-immunoprecipitation analysis demonstrated that ADBP-1 physically interacts with ADR-2, an RNA-editing enzyme from the ADAR (adenosine deaminase acting on dsRNA) family. In the adbp-1 mutant, as previously shown in adr-2 mutants, A-to-I RNA editing was not detected, suggesting that ADBP-1 is required for the RNA-editing activity of ADR-2. We found that ADBP-1 facilitates the nuclear localization of ADR-2. ADBP-1 may regulate ADR-2 activity and the consequent RNA editing and thereby antagonize RNAi-mediated transgene silencing in C. elegans.

摘要

小干扰RNA(siRNA)和微小RNA(miRNA)通过进化保守途径介导基因沉默。在秀丽隐杆线虫中,已知siRNA/miRNA途径也会影响转基因表达。为了鉴定调控siRNA/miRNA途径效率的基因,我们将转基因的表达水平作为基因沉默的指标,并分离出一个转基因沉默突变体adbp-1(ADR-2结合蛋白)。adbp-1突变以细胞自主方式导致皮下和肠道细胞中的转基因沉默,这取决于RNA干扰(RNAi)机制。adbp-1基因编码一种无保守结构域的蛋白质,该蛋白质定位于细胞核。酵母双杂交筛选和免疫共沉淀分析表明,ADBP-1与ADR-2发生物理相互作用,ADR-2是来自ADAR(作用于双链RNA的腺苷脱氨酶)家族的一种RNA编辑酶。在adbp-1突变体中,如之前在adr-2突变体中所显示的那样,未检测到A-to-I RNA编辑,这表明ADBP-1是ADR-2的RNA编辑活性所必需的。我们发现ADBP-1促进ADR-2的核定位。ADBP-1可能调节ADR-2的活性以及随之而来的RNA编辑,从而拮抗秀丽隐杆线虫中RNAi介导的转基因沉默。

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本文引用的文献

1
Redirection of silencing targets by adenosine-to-inosine editing of miRNAs.
Science. 2007 Feb 23;315(5815):1137-40. doi: 10.1126/science.1138050.
2
Editor meets silencer: crosstalk between RNA editing and RNA interference.
Nat Rev Mol Cell Biol. 2006 Dec;7(12):919-31. doi: 10.1038/nrm2061.
3
Diverse chromatin remodeling genes antagonize the Rb-involved SynMuv pathways in C. elegans.
PLoS Genet. 2006 May;2(5):e74. doi: 10.1371/journal.pgen.0020074. Epub 2006 May 19.
4
On the origin and functions of RNA-mediated silencing: from protists to man.
Curr Genet. 2006 Aug;50(2):81-99. doi: 10.1007/s00294-006-0078-x. Epub 2006 May 12.
5
RNA editing of human microRNAs.
Genome Biol. 2006;7(4):R27. doi: 10.1186/gb-2006-7-4-r27. Epub 2006 Apr 4.
6
Gene regulation by microRNAs.
Curr Opin Genet Dev. 2006 Apr;16(2):203-8. doi: 10.1016/j.gde.2006.02.012. Epub 2006 Feb 28.
7
Interacting endogenous and exogenous RNAi pathways in Caenorhabditis elegans.
RNA. 2006 Apr;12(4):589-97. doi: 10.1261/rna.2231506. Epub 2006 Feb 17.
9
Modulation of microRNA processing and expression through RNA editing by ADAR deaminases.
Nat Struct Mol Biol. 2006 Jan;13(1):13-21. doi: 10.1038/nsmb1041. Epub 2005 Dec 20.
10
RNA interference is an antiviral defence mechanism in Caenorhabditis elegans.
Nature. 2005 Aug 18;436(7053):1044-7. doi: 10.1038/nature03957.

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