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RNA 加工及其调控:对生物网络的全局洞察。

RNA processing and its regulation: global insights into biological networks.

机构信息

Howard Hughes Medical Institute, Laboratory of Molecular Neuro-Oncology, The Rockefeller University, New York, New York 10021, USA.

出版信息

Nat Rev Genet. 2010 Jan;11(1):75-87. doi: 10.1038/nrg2673.

Abstract

In recent years views of eukaryotic gene expression have been transformed by the finding that enormous diversity can be generated at the RNA level. Advances in technologies for characterizing RNA populations are revealing increasingly complete descriptions of RNA regulation and complexity; for example, through alternative splicing, alternative polyadenylation and RNA editing. New biochemical strategies to map protein-RNA interactions in vivo are yielding transcriptome-wide insights into mechanisms of RNA processing. These advances, combined with bioinformatics and genetic validation, are leading to the generation of functional RNA maps that reveal the rules underlying RNA regulation and networks of biologically coherent transcripts. Together these are providing new insights into molecular cell biology and disease.

摘要

近年来,通过发现 RNA 水平可以产生巨大的多样性,人们对真核生物基因表达的看法发生了转变。用于描述 RNA 群体的技术的进步正在揭示 RNA 调控和复杂性的越来越完整的描述;例如,通过选择性剪接、选择性多聚腺苷酸化和 RNA 编辑。用于在体内绘制蛋白质-RNA 相互作用图谱的新生化策略正在产生对 RNA 处理机制的全转录组见解。这些进展,加上生物信息学和遗传验证,正在导致生成功能 RNA 图谱,揭示 RNA 调控的规则和生物上一致的转录本网络。所有这些都为分子细胞生物学和疾病提供了新的见解。

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本文引用的文献

1
A regulator of Dscam mutually exclusive splicing fidelity.
Nat Struct Mol Biol. 2007 Dec;14(12):1134-40. doi: 10.1038/nsmb1339.
2
"Cotranscriptionality": the transcription elongation complex as a nexus for nuclear transactions.
Mol Cell. 2009 Oct 23;36(2):178-91. doi: 10.1016/j.molcel.2009.09.018.
3
Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches.
Nat Rev Mol Cell Biol. 2009 Nov;10(11):741-54. doi: 10.1038/nrm2777. Epub 2009 Sep 23.
6
Divergent transcription: a new feature of active promoters.
Cell Cycle. 2009 Aug 15;8(16):2557-64. doi: 10.4161/cc.8.16.9305. Epub 2009 Aug 19.
7
Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps.
Nature. 2009 Jul 23;460(7254):479-86. doi: 10.1038/nature08170. Epub 2009 Jun 17.
8
Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes.
Genes Dev. 2009 Jun 15;23(12):1379-86. doi: 10.1101/gad.1788009.
9
Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing.
Science. 2009 May 29;324(5931):1210-3. doi: 10.1126/science.1170995.
10
Cancer-associated regulation of alternative splicing.
Nat Struct Mol Biol. 2009 Jun;16(6):670-6. doi: 10.1038/nsmb.1608. Epub 2009 May 17.

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