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应用于系统生物学模型的敏感性分析方法。

Sensitivity analysis approaches applied to systems biology models.

机构信息

University of Freiburg, BIOSS Centre for Biological Signalling Studies, Freiburg, Germany.

出版信息

IET Syst Biol. 2011 Nov;5(6):336-6. doi: 10.1049/iet-syb.2011.0015.

Abstract

With the rising application of systems biology, sensitivity analysis methods have been widely applied to study the biological systems, including metabolic networks, signalling pathways and genetic circuits. Sensitivity analysis can provide valuable insights about how robust the biological responses are with respect to the changes of biological parameters and which model inputs are the key factors that affect the model outputs. In addition, sensitivity analysis is valuable for guiding experimental analysis, model reduction and parameter estimation. Local and global sensitivity analysis approaches are the two types of sensitivity analysis that are commonly applied in systems biology. Local sensitivity analysis is a classic method that studies the impact of small perturbations on the model outputs. On the other hand, global sensitivity analysis approaches have been applied to understand how the model outputs are affected by large variations of the model input parameters. In this review, the author introduces the basic concepts of sensitivity analysis approaches applied to systems biology models. Moreover, the author discusses the advantages and disadvantages of different sensitivity analysis methods, how to choose a proper sensitivity analysis approach, the available sensitivity analysis tools for systems biology models and the caveats in the interpretation of sensitivity analysis results.

摘要

随着系统生物学的应用不断增加,敏感性分析方法已广泛应用于研究生物系统,包括代谢网络、信号通路和遗传电路。敏感性分析可以提供有关生物响应对生物参数变化的稳健程度的有价值的见解,以及哪些模型输入是影响模型输出的关键因素。此外,敏感性分析对于指导实验分析、模型简化和参数估计也很有价值。局部敏感性分析和全局敏感性分析是系统生物学中常用的两种敏感性分析方法。局部敏感性分析是一种经典方法,用于研究模型输出对小扰动的影响。另一方面,全局敏感性分析方法已被应用于理解模型输入参数的大变化如何影响模型输出。在这篇综述中,作者介绍了应用于系统生物学模型的敏感性分析方法的基本概念。此外,作者还讨论了不同敏感性分析方法的优缺点、如何选择适当的敏感性分析方法、系统生物学模型可用的敏感性分析工具以及敏感性分析结果解释中的注意事项。

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