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斑马鱼神经表型数据库(ZND):一个用于斑马鱼神经表型数据的动态开放访问资源。

The Zebrafish Neurophenome Database (ZND): a dynamic open-access resource for zebrafish neurophenotypic data.

机构信息

Department of Pharmacology and Neuroscience Program, Zebrafish Neuroscience Research Consortium, Tulane University Medical School, New Orleans, Louisiana, USA.

出版信息

Zebrafish. 2012 Mar;9(1):8-14. doi: 10.1089/zeb.2011.0725. Epub 2011 Dec 15.

Abstract

Zebrafish (Danio rerio) are widely used in neuroscience research, where their utility as a model organism is rapidly expanding. Low cost, ease of experimental manipulations, and sufficient behavioral complexity make zebrafish a valuable tool for high-throughput studies in biomedicine. To complement the available repositories for zebrafish genetic information, there is a growing need for the collection of zebrafish neurobehavioral and neurological phenotypes. For this, we are establishing the Zebrafish Neurophenome Database (ZND; www.tulane.edu/∼znpindex/search ) as a new dynamic online open-access data repository for behavioral and related physiological data. ZND, currently focusing on adult zebrafish, combines zebrafish neurophenotypic data with a simple, easily searchable user interface, which allow scientists to view and compare results obtained by other laboratories using various treatments in different testing paradigms. As a developing community effort, ZND is expected to foster innovative research using zebrafish by federating the growing body of zebrafish neurophenotypic data.

摘要

斑马鱼(Danio rerio)被广泛应用于神经科学研究领域,作为一种模式生物,其应用范围正在迅速扩大。斑马鱼具有成本低、易于进行实验操作以及具有足够复杂的行为等特点,因此成为生物医学领域高通量研究的有价值工具。为了补充现有的斑马鱼遗传信息库,人们越来越需要收集斑马鱼的神经行为和神经表型数据。为此,我们正在建立斑马鱼神经表型数据库(Zebrafish Neurophenome Database,ZND;www.tulane.edu/∼znpindex/search),这是一个新的动态在线开放获取数据存储库,用于存储行为和相关生理数据。ZND 目前专注于成年斑马鱼,将斑马鱼神经表型数据与一个简单易用的搜索界面相结合,允许科学家查看和比较其他实验室在不同测试范式中使用不同处理方法获得的结果。作为一个不断发展的社区努力,ZND 有望通过整合不断增长的斑马鱼神经表型数据,促进使用斑马鱼进行创新性研究。

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